Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.9e-95 352.4 172 100.0
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.9e-95 352.4 172 100.0
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 5.3e-37 158.3 82 100.0
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 9.7e-31 137.5 285 36.8
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 8.2e-30 134.4 143 58.0
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 2.4e-29 132.9 99 71.7
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 4.5e-28 128.6 143 57.3
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 4.5e-28 128.6 143 57.3
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 4.5e-28 128.6 143 57.3
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 5.9e-28 128.3 99 67.7
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 7.6e-28 127.9 143 57.3
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 7.6e-28 127.9 143 57.3
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 7.6e-28 127.9 143 57.3
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 7.6e-28 127.9 99 67.7
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 5.0e-27 125.2 99 65.7
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 1.4e-26 123.6 82 84.1
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 6.1e-25 118.2 99 62.6
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 1.8e-24 116.7 100 62.0
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 7.4e-23 111.3 98 59.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 1.7e-22 110.2 98 59.2
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 2.2e-22 109.8 79 68.4
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 4.8e-22 108.6 95 58.9
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 4.8e-22 108.6 94 56.4
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 8.2e-22 107.8 79 68.4
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 1.4e-21 107.1 94 55.3
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 1.8e-21 106.7 98 58.2
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 2.4e-21 106.3 98 56.1
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 3.1e-21 105.9 97 55.7
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 4.1e-21 105.5 80 62.5
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 5.3e-21 105.1 80 68.8
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 6.9e-21 104.8 94 54.3
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 9.1e-21 104.4 98 55.1
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 1.2e-20 104.0 98 55.1
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 1.5e-20 103.6 97 56.7
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 2.0e-20 103.2 97 54.6
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 2.6e-20 102.8 79 65.8
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.6e-20 102.8 79 65.8
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.6e-20 102.8 79 65.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 2.6e-20 102.8 79 65.8
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 3.4e-20 102.4 98 54.1
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 3.4e-20 102.4 95 55.8
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 3.4e-20 102.4 98 55.1
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 3.4e-20 102.4 95 57.9
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 3.4e-20 102.4 97 54.6
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 4.5e-20 102.1 95 54.7
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 4.5e-20 102.1 79 65.8
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 5.9e-20 101.7 79 65.8
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 5.9e-20 101.7 79 64.6
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 7.7e-20 101.3 106 53.8
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 7.7e-20 101.3 98 55.1
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 7.7e-20 101.3 77 66.2
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.7e-19 100.1 109 48.6
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 2.9e-19 99.4 95 50.5
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 2.9e-19 99.4 109 50.5
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 3.8e-19 99.0 140 45.7
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 5.0e-19 98.6 76 63.2
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 5.0e-19 98.6 95 52.6
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 6.5e-19 98.2 95 54.7
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 6.5e-19 98.2 100 54.0
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 8.5e-19 97.8 95 49.5
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 8.5e-19 97.8 95 49.5
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 1.1e-18 97.4 95 53.7
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 1.1e-18 97.4 80 60.0
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 1.4e-18 97.1 98 56.1
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 2.5e-18 96.3 103 47.6
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 2.5e-18 96.3 98 52.0
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 3.2e-18 95.9 107 49.5
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 3.2e-18 95.9 78 62.8
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 4.2e-18 95.5 98 50.0
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 4.2e-18 95.5 99 49.5
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 5.5e-18 95.1 98 52.0
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 7.2e-18 94.7 79 59.5
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 7.2e-18 94.7 77 61.0
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 7.2e-18 94.7 97 50.5
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 9.4e-18 94.4 102 47.1
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 9.4e-18 94.4 95 52.6
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 9.4e-18 94.4 77 58.4
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 9.4e-18 94.4 112 43.8
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 1.2e-17 94.0 112 43.8
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 1.2e-17 94.0 98 50.0
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 2.1e-17 93.2 98 49.0
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 2.1e-17 93.2 112 42.9
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 2.7e-17 92.8 95 53.7
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 3.6e-17 92.4 80 57.5
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 4.7e-17 92.0 77 59.7
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.7e-17 92.0 109 45.0
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 4.7e-17 92.0 98 49.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 6.1e-17 91.7 112 44.6
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 6.1e-17 91.7 77 58.4
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 1.0e-16 90.9 99 50.5
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 1.0e-16 90.9 99 50.5
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 1.0e-16 90.9 98 50.0
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.4e-16 90.5 111 44.1
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 3.9e-16 89.0 83 55.4
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.9e-16 89.0 77 57.1
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 3.9e-16 89.0 77 57.1
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 5.1e-16 88.6 77 58.4
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 5.1e-16 88.6 102 45.1
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 5.1e-16 88.6 102 45.1
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 6.7e-16 88.2 97 50.5
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 8.8e-16 87.8 102 45.1
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 3.3e-15 85.9 112 44.6
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 4.4e-15 85.5 76 56.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 7.4e-15 84.7 98 48.0
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 7.4e-15 84.7 80 57.5
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 2.2e-14 83.2 98 48.0
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 2.8e-14 82.8 80 51.2
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 4.8e-14 82.0 98 48.0
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 4.8e-14 82.0 98 48.0
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 8.2e-14 81.3 95 46.3
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 8.2e-14 81.3 118 41.5
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 2.4e-13 79.7 80 52.5
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 3.1e-13 79.3 95 47.4
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 5.3e-13 78.6 74 51.4
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 9.1e-13 77.8 77 54.5
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 1.5e-12 77.0 80 52.5
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 2.0e-12 76.6 81 50.6
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 1.0e-11 74.3 77 49.4
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 1.0e-11 74.3 77 49.4
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 1.7e-11 73.6 79 49.4
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 2.2e-11 73.2 111 43.2
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 2.2e-11 73.2 98 43.9
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 2.9e-11 72.8 118 42.4
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 2.9e-11 72.8 77 50.6
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 5.0e-11 72.0 95 42.1
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 3.2e-10 69.3 74 44.6
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 1.2e-09 67.4 74 45.9
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 1.2e-09 67.4 78 46.2
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.6e-07 59.7 74 50.0
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 4.8e-06 55.5 42 61.9


User provided reference genes

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