Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 1.3e-49 199.5 106 100.0
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 5.4e-48 194.1 106 97.2
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 7.0e-48 193.7 106 97.2
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 7.0e-48 193.7 106 97.2
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 1.2e-44 183.0 124 83.1
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 5.2e-43 177.6 105 91.4
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 2.2e-41 172.2 105 87.6
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 4.5e-39 164.5 102 85.3
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 1.1e-37 159.8 115 79.1
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 3.3e-37 158.3 107 80.4
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 4.3e-37 157.9 106 82.1
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 4.3e-37 157.9 131 70.2
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 1.2e-36 156.4 108 78.7
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 2.1e-36 155.6 104 80.8
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 7.5e-34 147.1 108 74.1
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 7.3e-29 130.6 79 84.8
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 8.0e-28 127.1 106 63.2
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 2.3e-27 125.6 99 62.6
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 4.0e-27 124.8 106 62.3
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 5.2e-27 124.4 105 60.0
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 1.5e-26 122.9 101 64.4
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 2.0e-26 122.5 101 63.4
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 2.6e-26 122.1 98 64.3
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 5.8e-26 120.9 92 65.2
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 7.5e-26 120.6 101 62.4
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 9.8e-26 120.2 99 62.6
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 1.3e-25 119.8 101 62.4
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 1.7e-25 119.4 101 62.4
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 1.7e-25 119.4 92 64.1
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 2.2e-25 119.0 101 62.4
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 2.9e-25 118.6 96 61.5
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 3.7e-25 118.2 104 54.8
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 3.7e-25 118.2 92 65.2
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 3.7e-25 118.2 107 57.9
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 1.1e-24 116.7 92 62.0
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 1.4e-24 116.3 101 61.4
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 1.9e-24 115.9 103 59.2
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 2.4e-24 115.5 107 62.6
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 2.4e-24 115.5 92 62.0
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 5.4e-24 114.4 91 61.5
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 9.2e-24 113.6 107 59.8
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 1.2e-23 113.2 90 63.3
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 1.6e-23 112.8 104 59.6
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 2.7e-23 112.1 102 59.8
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 2.7e-23 112.1 98 57.1
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 2.7e-23 112.1 90 62.2
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 2.7e-23 112.1 100 63.0
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 3.5e-23 111.7 101 59.4
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 3.5e-23 111.7 98 57.1
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 3.5e-23 111.7 101 60.4
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 3.5e-23 111.7 91 59.3
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 3.5e-23 111.7 91 59.3
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 3.5e-23 111.7 91 59.3
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 3.5e-23 111.7 90 61.1
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 3.5e-23 111.7 101 59.4
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 4.6e-23 111.3 107 56.1
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 4.6e-23 111.3 91 62.6
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 6.0e-23 110.9 107 57.0
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 7.8e-23 110.5 101 59.4
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 7.8e-23 110.5 89 62.9
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 7.8e-23 110.5 107 56.1
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 1.0e-22 110.2 105 58.1
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 1.0e-22 110.2 107 58.9
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 1.0e-22 110.2 95 58.9
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 1.3e-22 109.8 89 61.8
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 1.3e-22 109.8 89 61.8
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 1.3e-22 109.8 92 62.0
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 1.7e-22 109.4 92 59.8
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 1.7e-22 109.4 90 62.2
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 3.0e-22 108.6 101 59.4
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 3.9e-22 108.2 107 57.0
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 3.9e-22 108.2 90 61.1
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 3.9e-22 108.2 90 60.0
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 5.0e-22 107.8 98 57.1
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 6.6e-22 107.5 101 59.4
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 6.6e-22 107.5 94 61.7
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 8.6e-22 107.1 96 56.2
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 1.1e-21 106.7 88 61.4
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 1.5e-21 106.3 107 55.1
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 1.2e-20 103.2 99 55.6
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 1.6e-20 102.8 97 54.6
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 1.6e-20 102.8 101 58.4
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 1.6e-20 102.8 110 54.5
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 6.2e-20 100.9 96 57.3
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 1.1e-19 100.1 86 61.6
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 1.4e-19 99.8 89 56.2
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 1.8e-19 99.4 92 57.6
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 3.4e-18 95.1 95 51.6
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 5.8e-18 94.4 103 47.6
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 1.3e-17 93.2 151 39.7
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 2.2e-17 92.4 90 48.9
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 2.4e-16 89.0 70 61.4
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 9.2e-16 87.0 72 58.3
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 9.2e-16 87.0 83 57.8
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 4.6e-15 84.7 83 57.8
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 6.0e-15 84.3 97 50.5
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 7.8e-15 84.0 80 56.2
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 8.6e-14 80.5 88 53.4
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 2.5e-13 79.0 61 62.3
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 4.3e-13 78.2 60 63.3
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 7.3e-13 77.4 73 54.8
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 2.8e-12 75.5 85 50.6
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 7.1e-08 60.8 89 42.7
A08p25730 Brassica napus HOM05D007285 ORTHO05D009224 3.0e-06 55.5 34 73.5
BraA08t34523Z Brassica rapa HOM05D007285 ORTHO05D009224 3.0e-06 55.5 34 73.5
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 8.6e-06 53.9 64 50.0


User provided reference genes

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