Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 2.2e-166 589.0 306 100.0
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 7.4e-159 563.9 304 96.4
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 7.0e-149 530.8 282 97.5
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 2.6e-148 528.9 282 97.5
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 2.5e-146 522.3 282 97.2
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 9.4e-138 493.8 282 91.5
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.7e-137 492.3 283 92.6
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 8.0e-129 464.2 283 86.6
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 2.2e-126 456.1 287 85.0
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 1.4e-125 453.4 282 85.1
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 2.4e-125 452.6 294 82.0
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.2e-124 450.3 283 83.4
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 2.0e-124 449.5 283 83.7
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.3e-112 409.5 278 77.0
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 5.4e-109 398.3 292 71.2
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 5.1e-107 391.7 287 72.1
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 2.5e-106 389.4 262 75.2
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 5.6e-106 388.3 288 70.5
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.4e-104 383.6 283 71.0
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 2.0e-103 379.8 277 71.8
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 7.5e-103 377.9 296 68.9
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 2.2e-102 376.3 283 71.7
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 1.9e-101 373.2 282 70.6
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 9.2e-101 370.9 294 67.7
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.1e-100 369.8 284 69.0
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.7e-100 369.4 299 67.2
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 3.5e-100 369.0 293 65.2
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 4.6e-100 368.6 282 69.5
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 4.6e-100 368.6 281 69.8
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 7.8e-100 367.9 289 66.8
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.0e-99 367.5 282 70.2
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 1.0e-99 367.5 294 68.7
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.3e-99 367.1 282 70.6
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 2.3e-99 366.3 294 68.0
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 3.0e-99 365.9 231 79.2
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 3.9e-99 365.5 294 67.7
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 8.6e-99 364.4 282 69.5
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.1e-98 364.0 285 69.5
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 4.3e-98 362.1 293 64.2
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 5.6e-98 361.7 230 78.7
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.6e-98 361.7 253 74.3
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 9.5e-98 360.9 301 65.4
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.6e-97 360.1 231 77.5
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.6e-97 360.1 301 65.4
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 2.8e-97 359.4 292 66.8
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 8.1e-97 357.8 247 71.3
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.1e-96 357.5 237 74.3
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.4e-96 356.3 237 73.8
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 8.9e-96 354.4 295 65.8
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 1.5e-95 353.6 335 59.7
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 2.6e-95 352.8 284 65.5
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 3.4e-95 352.4 224 78.1
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 4.4e-95 352.1 284 64.8
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 5.8e-95 351.7 299 64.5
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 5.8e-95 351.7 292 63.7
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 9.9e-95 350.9 290 63.8
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 4.9e-94 348.6 252 67.9
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 4.9e-94 348.6 254 72.4
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 8.4e-94 347.8 225 76.0
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 8.4e-94 347.8 241 73.0
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 1.1e-93 347.4 234 72.2
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.4e-93 347.1 234 72.6
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 2.4e-93 346.3 283 65.7
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 2.4e-93 346.3 234 71.8
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 3.2e-93 345.9 275 66.5
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.2e-92 344.0 269 66.9
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.6e-92 343.6 277 64.6
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.6e-92 343.6 263 66.9
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 2.1e-92 343.2 236 70.3
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 2.1e-92 343.2 225 74.7
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 2.7e-92 342.8 247 69.6
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 6.0e-92 341.7 230 73.0
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 7.8e-92 341.3 291 63.2
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.7e-91 340.1 228 75.0
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.1e-90 337.4 226 74.3
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.5e-90 337.0 263 66.2
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 1.5e-90 337.0 240 71.2
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 3.3e-90 335.9 240 70.0
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.3e-90 335.9 277 63.5
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 4.3e-90 335.5 260 65.0
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 7.3e-90 334.7 287 61.7
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 1.6e-89 333.6 253 69.2
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.6e-89 333.6 280 62.5
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 3.6e-89 332.4 250 69.2
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 2.4e-88 329.7 233 69.5
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 9.0e-88 327.8 264 62.1
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 7.6e-87 324.7 219 72.1
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 9.9e-87 324.3 242 67.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 3.2e-85 319.3 284 63.0
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 1.6e-84 317.0 248 67.7
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 3.0e-83 312.8 243 65.8
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 5.6e-82 308.5 301 54.2
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 9.6e-82 307.8 262 63.4
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 6.2e-81 305.1 280 60.7
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 7.6e-79 298.1 255 63.5
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 7.6e-79 298.1 202 75.7
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 9.9e-79 297.7 284 58.5
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 9.9e-79 297.7 226 70.8
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 4.2e-77 292.4 270 57.4
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 9.3e-77 291.2 221 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 4.6e-76 288.9 254 59.8
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 4.3e-74 282.3 208 66.3
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.2e-71 274.2 206 68.4
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.5e-71 273.9 262 56.1
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.3e-67 260.8 188 72.9
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 5.1e-67 258.8 239 55.6
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 3.5e-60 236.1 260 51.2
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.8e-57 226.5 141 77.3
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 3.7e-49 199.5 222 50.9
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.1e-45 188.0 148 66.9
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 3.3e-42 176.4 228 43.4
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 7.7e-39 165.2 161 57.1
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.5e-37 161.0 215 42.8
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 2.2e-30 137.1 87 75.9
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.5e-29 134.4 137 54.7
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 4.7e-20 102.8 83 60.2
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.8e-19 100.9 66 75.8
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 8.8e-19 98.6 51 92.2
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 4.4e-18 96.3 58 79.3
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 5.7e-18 95.9 60 75.0
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.7e-17 94.4 49 89.8
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 2.8e-17 93.6 69 63.8
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 6.3e-17 92.4 85 63.5
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.1e-16 91.7 56 75.0
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 2.4e-16 90.5 53 83.0
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 5.4e-16 89.4 137 42.3
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 2.7e-15 87.0 65 61.5
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 9.5e-13 78.6 83 51.8
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 3.6e-12 76.6 171 35.1
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.8e-11 74.3 83 51.8
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 8.9e-11 72.0 48 68.8
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 9.8e-10 68.6 176 34.1
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 3.9e-06 56.6 44 63.6


User provided reference genes

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