Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 4.6e-36 154.1 79 100.0
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 7.1e-29 130.2 79 87.3
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 2.1e-20 102.1 58 87.9
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.0e-19 99.8 51 94.1
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.0e-19 99.8 51 94.1
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 1.0e-19 99.8 51 94.1
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.0e-19 99.8 51 94.1
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.0e-19 99.8 51 94.1
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 2.3e-19 98.6 51 92.2
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.1e-18 96.3 51 88.2
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 9.6e-18 93.2 51 88.2
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 1.3e-17 92.8 51 86.3
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 3.6e-17 91.3 51 84.3
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.4e-16 89.4 51 82.4
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 4.0e-16 87.8 56 75.0
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 1.2e-15 86.3 51 78.4
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.2e-15 86.3 51 78.4
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.2e-15 86.3 51 78.4
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.5e-15 85.9 51 80.4
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.0e-15 85.5 51 80.4
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.0e-15 85.5 51 78.4
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 2.0e-15 85.5 51 78.4
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 3.4e-15 84.7 52 73.1
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 3.4e-15 84.7 51 76.5
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 3.4e-15 84.7 51 76.5
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 3.4e-15 84.7 51 76.5
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 4.5e-15 84.3 51 78.4
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 5.8e-15 84.0 51 76.5
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 5.8e-15 84.0 51 76.5
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 5.8e-15 84.0 51 76.5
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.8e-15 84.0 51 76.5
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.8e-15 84.0 51 76.5
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 5.8e-15 84.0 52 75.0
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 5.8e-15 84.0 51 78.4
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 5.8e-15 84.0 63 66.7
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 9.9e-15 83.2 52 71.2
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.3e-14 82.8 51 74.5
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.3e-14 82.8 51 74.5
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.3e-14 82.8 52 69.2
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.3e-14 82.8 51 74.5
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.3e-14 82.8 51 76.5
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 1.7e-14 82.4 51 76.5
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.7e-14 82.4 52 73.1
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.7e-14 82.4 51 76.5
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 1.7e-14 82.4 51 72.5
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.2e-14 82.0 51 76.5
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.2e-14 82.0 52 75.0
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 2.9e-14 81.6 52 71.2
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 2.9e-14 81.6 51 74.5
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 2.9e-14 81.6 52 75.0
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.9e-14 81.6 51 72.5
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.9e-14 81.6 51 74.5
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 2.9e-14 81.6 51 76.5
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 3.8e-14 81.3 51 74.5
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 3.8e-14 81.3 51 74.5
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 3.8e-14 81.3 60 65.0
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 3.8e-14 81.3 51 72.5
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 4.9e-14 80.9 52 71.2
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 4.9e-14 80.9 60 70.0
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 4.9e-14 80.9 51 72.5
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 6.4e-14 80.5 52 69.2
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 6.4e-14 80.5 51 74.5
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 8.4e-14 80.1 52 71.2
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 8.4e-14 80.1 52 71.2
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 8.4e-14 80.1 51 72.5
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 1.1e-13 79.7 51 72.5
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.1e-13 79.7 51 74.5
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.4e-13 79.3 51 72.5
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.4e-13 79.3 51 72.5
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.4e-13 79.3 51 72.5
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 1.4e-13 79.3 52 69.2
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.4e-13 79.3 52 69.2
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.4e-13 79.3 51 76.5
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 1.9e-13 79.0 54 70.4
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.9e-13 79.0 51 74.5
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.9e-13 79.0 54 68.5
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.4e-13 78.6 52 73.1
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.4e-13 78.6 51 68.6
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.4e-13 78.6 51 68.6
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 2.4e-13 78.6 52 69.2
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 2.4e-13 78.6 52 69.2
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 3.2e-13 78.2 49 73.5
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 4.2e-13 77.8 51 68.6
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 4.2e-13 77.8 52 69.2
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 5.4e-13 77.4 51 70.6
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 5.4e-13 77.4 51 70.6
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 5.4e-13 77.4 52 67.3
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 7.1e-13 77.0 51 70.6
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 7.1e-13 77.0 54 68.5
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 7.1e-13 77.0 51 72.5
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 7.1e-13 77.0 60 68.3
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 9.3e-13 76.6 65 60.0
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 9.3e-13 76.6 51 70.6
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 1.2e-12 76.3 51 70.6
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 2.1e-12 75.5 49 71.4
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.1e-12 75.5 51 68.6
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 2.7e-12 75.1 51 70.6
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 2.7e-12 75.1 51 70.6
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 3.5e-12 74.7 51 68.6
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 3.5e-12 74.7 51 68.6
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 6.0e-12 73.9 51 70.6
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.0e-11 73.2 49 65.3
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 1.0e-11 73.2 53 64.2
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.0e-11 73.2 51 68.6
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.3e-11 72.8 51 66.7
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.8e-11 72.4 52 65.4
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.8e-11 72.4 51 64.7
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 3.0e-11 71.6 52 65.4
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 3.0e-11 71.6 51 64.7
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.9e-10 68.9 51 62.7
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.9e-10 68.9 51 62.7
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.1e-08 63.2 51 58.8
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 1.7e-06 55.8 36 69.4


User provided reference genes

Program Settings