Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 3.8e-168 594.7 295 100.0
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 5.3e-154 547.7 304 92.4
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 6.1e-150 534.3 295 92.2
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.3e-147 526.6 283 94.3
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.5e-145 519.6 269 97.0
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 6.3e-131 471.1 299 81.9
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 2.7e-129 465.7 294 80.6
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 5.5e-127 458.0 303 78.2
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 6.1e-126 454.5 294 78.6
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 2.0e-124 449.5 294 77.9
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 9.8e-124 447.2 295 77.6
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.3e-123 446.8 295 78.0
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 6.3e-123 444.5 295 78.0
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 5.4e-122 441.4 303 75.6
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 1.2e-121 440.3 295 77.3
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.0e-120 437.2 295 77.3
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.9e-119 433.0 294 75.5
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 3.9e-104 382.1 291 66.3
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.7e-96 356.7 298 61.4
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.1e-95 354.0 298 61.1
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.5e-95 353.6 294 61.2
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 7.3e-95 351.3 294 61.6
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 6.2e-94 348.2 295 60.3
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 1.4e-93 347.1 304 60.5
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.8e-93 346.7 297 59.9
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 3.4e-92 342.4 296 61.1
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 1.7e-91 340.1 304 58.6
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 8.3e-91 337.8 298 58.4
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 4.1e-90 335.5 307 58.6
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.2e-89 334.0 306 58.2
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 2.7e-89 332.8 302 58.3
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.3e-88 330.5 304 57.6
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 6.6e-88 328.2 303 56.8
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 2.5e-87 326.2 349 53.9
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 4.3e-87 325.5 304 56.2
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 9.5e-87 324.3 293 58.4
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 2.1e-86 323.2 317 55.2
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 2.8e-86 322.8 287 58.2
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.6e-86 322.4 304 56.9
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 4.7e-86 322.0 302 57.3
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.1e-85 320.9 303 56.4
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.4e-85 319.7 304 55.6
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 3.1e-85 319.3 294 56.8
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.2e-84 317.4 310 55.2
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.2e-84 317.4 300 54.3
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.0e-84 316.6 291 58.4
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 3.4e-84 315.8 325 54.5
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 5.8e-84 315.1 298 56.4
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 1.3e-83 313.9 304 55.3
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 3.8e-83 312.4 303 55.4
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 6.4e-83 311.6 306 52.9
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 6.4e-83 311.6 303 55.4
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 6.4e-83 311.6 308 52.9
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 1.4e-82 310.5 303 55.4
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.4e-82 309.7 293 56.7
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.2e-82 309.3 300 56.7
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 4.2e-82 308.9 267 61.0
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 4.2e-82 308.9 297 55.2
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 7.1e-82 308.1 300 55.7
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 6.0e-81 305.1 304 52.3
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 7.8e-81 304.7 301 53.8
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 2.3e-80 303.1 325 52.0
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.5e-79 300.4 305 51.5
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.3e-79 298.1 301 52.8
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 3.6e-78 295.8 305 53.4
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 3.6e-78 295.8 267 59.2
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 3.6e-78 295.8 306 54.6
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.4e-77 293.9 298 52.3
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 1.8e-77 293.5 305 50.8
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 2.4e-77 293.1 189 78.3
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.4e-76 289.3 298 52.0
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 3.4e-76 289.3 304 51.3
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 1.9e-74 283.5 307 50.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.9e-74 283.5 289 50.2
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 5.4e-74 282.0 303 52.1
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 6.0e-73 278.5 297 50.8
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.0e-72 277.7 299 50.8
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 3.0e-72 276.2 297 51.2
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 5.6e-71 271.9 296 50.7
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 2.8e-70 269.6 269 53.5
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 1.4e-69 267.3 288 52.4
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.8e-69 266.9 302 48.7
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 1.5e-68 263.8 232 56.0
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 5.8e-68 261.9 270 53.7
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 3.2e-66 256.1 237 57.8
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 3.2e-66 256.1 321 48.6
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.6e-62 243.8 286 46.9
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 3.7e-62 242.7 297 48.1
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 5.3e-61 238.8 286 47.2
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 6.9e-61 238.4 189 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 2.5e-58 229.9 309 45.0
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.2e-57 227.6 297 44.4
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 2.1e-57 226.9 184 61.4
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 6.0e-57 225.3 159 70.4
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 2.5e-55 219.9 301 44.5
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 9.0e-53 211.5 287 42.9
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 6.5e-51 205.3 278 46.4
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 4.6e-49 199.1 107 89.7
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.3e-47 193.0 175 55.4
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.8e-45 187.2 311 38.9
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.6e-44 183.3 286 38.8
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 3.4e-44 183.0 296 39.5
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 5.9e-44 182.2 292 39.4
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 2.2e-43 180.3 273 41.4
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 8.5e-43 178.3 290 41.4
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.1e-42 177.9 295 39.0
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.4e-42 177.6 133 66.2
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.4e-42 177.6 133 66.2
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 5.5e-42 175.6 299 38.5
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.4e-40 171.0 308 39.0
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.3e-40 170.2 285 41.4
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 1.1e-37 161.4 106 75.5
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.8e-37 160.6 214 45.3
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 2.4e-37 160.2 105 74.3
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.0e-36 157.1 302 39.1
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 3.4e-36 156.4 182 47.3
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.0e-35 154.8 302 38.1
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 2.9e-35 153.3 149 53.0
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 3.2e-34 149.8 302 38.4
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 2.1e-33 147.1 298 35.9
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 2.1e-33 147.1 172 45.3
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 4.7e-33 146.0 212 40.6
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.4e-31 138.7 138 52.9
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.9e-27 126.7 224 36.6
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 1.1e-23 114.8 151 42.4
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-23 114.8 110 54.5
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 9.7e-23 111.7 195 36.4
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 7.0e-21 105.5 107 57.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.2e-20 104.8 54 88.9
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.6e-20 103.6 152 38.8
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 7.7e-20 102.1 152 38.2
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.5e-15 87.8 50 82.0
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 5.2e-08 62.8 97 41.2
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.8e-08 62.4 100 37.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 4.4e-07 59.7 65 47.7
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 9.8e-07 58.5 94 38.3
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 2.2e-06 57.4 37 70.3


User provided reference genes

Program Settings