Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p26080 Brassica napus HOM05D003040 ORTHO05D003443 3.9e-60 234.6 115 100.0
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 3.5e-45 184.9 146 68.5
A09p38560 Brassica napus HOM05D003040 ORTHO05D003443 1.0e-44 183.3 95 95.8
BraA09t39362Z Brassica rapa HOM05D003040 ORTHO05D003443 3.9e-36 154.8 163 56.4
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 7.6e-32 140.6 140 57.1
Sp1g23600 Schrenkiella parvula HOM05D003040 ORTHO05D003443 3.5e-29 131.7 137 58.4
CARHR026960 Cardamine hirsuta HOM05D003040 ORTHO05D003443 4.3e-27 124.8 144 51.4
BraA07t28972Z Brassica rapa HOM05D003040 ORTHO05D003443 9.6e-27 123.6 142 52.8
BcaB03g13990 Brassica carinata HOM05D003040 ORTHO05D003443 2.4e-25 119.0 130 54.6
BcaC01g06956 Brassica carinata HOM05D003040 ORTHO05D003443 3.1e-25 118.6 141 52.5
A07p11880 Brassica napus HOM05D003040 ORTHO05D003443 3.1e-25 118.6 143 51.7
BcaC01g01617 Brassica carinata HOM05D003040 ORTHO05D003443 4.5e-24 114.8 136 54.4
BolC3t19663H Brassica oleracea HOM05D003040 ORTHO05D003443 4.5e-24 114.8 136 54.4
C03p73720 Brassica napus HOM05D003040 ORTHO05D003443 1.7e-23 112.8 136 53.7
AL1G40780 Arabidopsis lyrata HOM05D003040 ORTHO05D003443 2.9e-23 112.1 169 43.2
BolC5t31327H Brassica oleracea HOM05D003040 ORTHO05D003443 3.2e-22 108.6 54 98.1
Carub.0001s2591 Capsella rubella HOM05D003040 ORTHO05D003443 7.2e-22 107.5 178 41.0
A08p26350 Brassica napus HOM05D003040 ORTHO05D003443 3.0e-20 102.1 166 44.0
BraA08t34586Z Brassica rapa HOM05D003040 ORTHO05D003443 3.0e-20 102.1 166 44.0
Thhalv10009145m.g Eutrema salsugineum HOM05D003040 ORTHO05D003443 1.1e-19 100.1 122 50.8
C07p17820 Brassica napus HOM05D003040 ORTHO05D003443 5.3e-17 91.3 59 84.7
BolC7t42288H Brassica oleracea HOM05D003040 ORTHO05D003443 5.3e-17 91.3 59 84.7
BcaC06g35281 Brassica carinata HOM05D003040 ORTHO05D003443 9.0e-17 90.5 56 83.9
AT1G27380 Arabidopsis thaliana HOM05D003040 ORTHO05D003443 3.8e-15 85.1 49 81.6
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 7.2e-14 80.9 145 41.4
Sc25g0005640 Simmondsia chinensis HOM05D003040 ORTHO05D003443 1.2e-13 80.1 114 42.1
THA.LOC104825502 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 1.1e-11 73.6 171 34.5
EL10Ac3g07394 Beta vulgaris HOM05D003040 ORTHO05D003443 5.7e-11 71.2 83 44.6
MD04G1027900 Malus domestica HOM05D003040 ORTHO05D003443 1.3e-10 70.1 128 36.7
Potri.002G233400 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.3e-10 70.1 131 34.4
MBI11_g07423_MAGBIO Magnolia biondii HOM05D003040 ORTHO05D003443 1.7e-10 69.7 122 37.7
Prupe.1G177300 Prunus persica HOM05D003040 ORTHO05D003443 3.7e-10 68.6 132 35.6
Peaxi162Scf00378g00633 Petunia axillaris HOM05D003040 ORTHO05D003443 4.8e-10 68.2 76 48.7
Sabra02G0178100 Salix brachista HOM05D003040 ORTHO05D003443 4.8e-10 68.2 133 35.3
Duzib268G1790 Durio zibethinus HOM05D003040 ORTHO05D003443 6.3e-10 67.8 121 38.8
Duzib268G1117 Durio zibethinus HOM05D003040 ORTHO05D003443 1.1e-09 67.0 123 38.2
TAR636G3649 Trochodendron aralioides HOM05D003040 ORTHO05D003443 1.4e-09 66.6 121 40.5
CiPaw.01G109100 Carya illinoinensis HOM05D003040 ORTHO05D003443 2.4e-09 65.9 125 36.8
COL.COLO4_05703 Corchorus olitorius HOM05D003040 ORTHO05D003443 4.1e-09 65.1 124 35.5
Nn1g09813 Nelumbo nucifera HOM05D003040 ORTHO05D003443 4.1e-09 65.1 122 39.3
CSS0033054 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 9.1e-09 63.9 147 33.3
QL10p044472 Quercus lobata HOM05D003040 ORTHO05D003443 9.1e-09 63.9 125 35.2
Peaxi162Scf00286g00236 Petunia axillaris HOM05D003040 ORTHO05D003443 1.2e-08 63.5 79 48.1
THA.LOC104807545 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 1.2e-08 63.5 48 64.6
Duzib128G0697 Durio zibethinus HOM05D003040 ORTHO05D003443 2.0e-08 62.8 125 34.4
Nitab4.5_0006213g0060 Nicotiana tabacum HOM05D003040 ORTHO05D003443 2.0e-08 62.8 86 46.5
Haze_11716 Corylus avellana HOM05D003040 ORTHO05D003443 2.6e-08 62.4 125 35.2
Thecc.05G199700 Theobroma cacao HOM05D003040 ORTHO05D003443 2.6e-08 62.4 135 34.8
PGR083G1221 Punica granatum HOM05D003040 ORTHO05D003443 3.4e-08 62.0 132 33.3
vmacro00570 Vaccinium macrocarpon HOM05D003040 ORTHO05D003443 3.4e-08 62.0 132 36.4
Sabra13G0077300 Salix brachista HOM05D003040 ORTHO05D003443 5.9e-08 61.2 99 41.4
Lj1g0021745 Lotus japonicus HOM05D003040 ORTHO05D003443 7.7e-08 60.8 128 37.5
Rhsim09G0035800 Rhododendron simsii HOM05D003040 ORTHO05D003443 7.7e-08 60.8 143 32.9
Thecc.04G192600 Theobroma cacao HOM05D003040 ORTHO05D003443 7.7e-08 60.8 124 38.7
HanXRQChr10g0293921 Helianthus annuus HOM05D003040 ORTHO05D003443 1.0e-07 60.5 127 33.9
Hma1.2p1_0412F.1_g147250 Hydrangea macrophylla HOM05D003040 ORTHO05D003443 1.0e-07 60.5 126 34.9
Duzib177G0951 Durio zibethinus HOM05D003040 ORTHO05D003443 1.3e-07 60.1 141 32.6
Migut.N00459 Erythranthe guttata HOM05D003040 ORTHO05D003443 1.3e-07 60.1 114 34.2
FvH4_6g00540 Fragaria vesca HOM05D003040 ORTHO05D003443 1.3e-07 60.1 113 33.6
FAN14G2832 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.3e-07 60.1 113 33.6
Potri.013G086600 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.3e-07 60.1 129 35.7
GSVIVG01031660001 Vitis vinifera HOM05D003040 ORTHO05D003443 1.3e-07 60.1 114 37.7
Aqoxy2G04067 Aquilegia oxysepala HOM05D003040 ORTHO05D003443 2.2e-07 59.3 123 33.3
Duzib106G1609 Durio zibethinus HOM05D003040 ORTHO05D003443 2.2e-07 59.3 121 33.9
RcHm_v2.0_Chr4g0410351 Rosa chinensis HOM05D003040 ORTHO05D003443 2.2e-07 59.3 123 34.1
Potri.014G147000 Populus trichocarpa HOM05D003040 ORTHO05D003443 2.9e-07 58.9 128 32.8
BcaC06g35282 Brassica carinata HOM05D003040 ORTHO05D003443 3.8e-07 58.5 46 63.0
BraA02t05329Z Brassica rapa HOM05D003040 ORTHO05D003443 5.0e-07 58.2 118 37.3
Eucgr.H00463 Eucalyptus grandis HOM05D003040 ORTHO05D003443 5.0e-07 58.2 130 33.8
Gohir.A02G017900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 5.0e-07 58.2 127 35.4
PSO357G0622 Papaver somniferum HOM05D003040 ORTHO05D003443 5.0e-07 58.2 112 34.8
HPP92_000419 Vanilla planifolia HOM05D003040 ORTHO05D003443 6.5e-07 57.8 129 34.1
Lsat_1_v5_gn_2_48200 Lactuca sativa HOM05D003040 ORTHO05D003443 8.5e-07 57.4 111 34.2
Sc16g0010350 Simmondsia chinensis HOM05D003040 ORTHO05D003443 8.5e-07 57.4 142 32.4
HPP92_000352 Vanilla planifolia HOM05D003040 ORTHO05D003443 8.5e-07 57.4 103 35.0
Atru.chr12.1791 Acer truncatum HOM05D003040 ORTHO05D003443 1.1e-06 57.0 129 33.3
C09p60680 Brassica napus HOM05D003040 ORTHO05D003443 1.1e-06 57.0 113 38.9
BolC9t58899H Brassica oleracea HOM05D003040 ORTHO05D003443 1.1e-06 57.0 113 38.9
CiPaw.07G079700 Carya illinoinensis HOM05D003040 ORTHO05D003443 1.1e-06 57.0 126 34.1
PSO170G3622 Papaver somniferum HOM05D003040 ORTHO05D003443 1.1e-06 57.0 112 34.8
Solyc11g008880.2 Solanum lycopersicum HOM05D003040 ORTHO05D003443 1.1e-06 57.0 136 30.9
Dinv09885 Davidia involucrata HOM05D003040 ORTHO05D003443 1.4e-06 56.6 123 34.1
SalBow1G6107 Salvia bowleyana HOM05D000001 ORTHO05D010091 1.4e-06 56.6 117 32.5
AUR62020938 Chenopodium quinoa HOM05D003040 ORTHO05D003443 1.9e-06 56.2 140 32.9
Cc09_g03590 Coffea canephora HOM05D003040 ORTHO05D003443 1.9e-06 56.2 130 32.3
Lj3A380G19 Lonicera japonica HOM05D003040 ORTHO05D003443 1.9e-06 56.2 121 36.4
Medtr7g021660 Medicago truncatula HOM05D003040 ORTHO05D003443 1.9e-06 56.2 126 34.1
Hund07342 Selenicereus undatus HOM05D003040 ORTHO05D003443 1.9e-06 56.2 123 32.5
Aa31LG11G13170 Aethionema arabicum HOM05D003040 ORTHO05D003443 2.5e-06 55.8 115 36.5
Carub.0006s1469 Capsella rubella HOM05D003040 ORTHO05D003443 2.5e-06 55.8 121 35.5
Migut.F01874 Erythranthe guttata HOM05D003040 ORTHO05D003443 2.5e-06 55.8 115 33.9
HanXRQChr02g0039671 Helianthus annuus HOM05D003040 ORTHO05D003443 2.5e-06 55.8 128 30.5
Gohir.D02G020100 Gossypium hirsutum HOM05D003040 ORTHO05D003443 3.2e-06 55.5 127 33.1
Lsat_1_v5_gn_9_48880 Lactuca sativa HOM05D003040 ORTHO05D003443 3.2e-06 55.5 129 31.8
Sabra19G0062800 Salix brachista HOM05D003040 ORTHO05D003443 4.2e-06 55.1 98 40.8
ATR0308G001 Amborella trichopoda HOM05D003040 ORTHO05D003443 5.5e-06 54.7 107 35.5
CARHR196740 Cardamine hirsuta HOM05D003040 ORTHO05D003443 5.5e-06 54.7 112 35.7
Eucgr.H01387 Eucalyptus grandis HOM05D003040 ORTHO05D003443 5.5e-06 54.7 132 29.5
Gohir.A05G391300 Gossypium hirsutum HOM05D003040 ORTHO05D003443 5.5e-06 54.7 136 33.1
Sopen11g004660 Solanum pennellii HOM05D003040 ORTHO05D003443 5.5e-06 54.7 127 29.1
GSVIVG01019115001 Vitis vinifera HOM05D003040 ORTHO05D003443 5.5e-06 54.7 119 30.3
FvH4_4g12280 Fragaria vesca HOM05D003040 ORTHO05D003443 7.2e-06 54.3 37 64.9
FAN07G1530 Fragaria x ananassa HOM05D003040 ORTHO05D003443 7.2e-06 54.3 37 64.9
FAN12G1098 Fragaria x ananassa HOM05D003040 ORTHO05D003443 7.2e-06 54.3 37 64.9
FAN12G3503 Fragaria x ananassa HOM05D003040 ORTHO05D003443 7.2e-06 54.3 37 64.9
FAN22G2136 Fragaria x ananassa HOM05D003040 ORTHO05D003443 7.2e-06 54.3 37 64.9
Manes.12G006100 Manihot esculenta HOM05D003040 ORTHO05D003443 7.2e-06 54.3 122 34.4
Psat3g189120 Pisum sativum HOM05D003040 ORTHO05D003443 7.2e-06 54.3 125 30.4
THA.LOC104820915 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 7.2e-06 54.3 123 32.5
VMungo1383G1123 Vigna mungo HOM05D003040 ORTHO05D003443 7.2e-06 54.3 123 31.7
Ah.13g077600 Amaranthus hybridus HOM05D000425 ORTHO05D007728 9.4e-06 53.9 40 65.0
FAN17G1608 Fragaria x ananassa HOM05D003040 ORTHO05D003443 9.4e-06 53.9 37 64.9
Gorai.005G025300 Gossypium raimondii HOM05D003040 ORTHO05D003443 9.4e-06 53.9 127 32.3
Nitab4.5_0001653g0110 Nicotiana tabacum HOM05D003040 ORTHO05D003443 9.4e-06 53.9 117 32.5
QL01p048572 Quercus lobata HOM05D003040 ORTHO05D003443 9.4e-06 53.9 124 34.7
PGSC0003DMG400016167 Solanum tuberosum HOM05D003040 ORTHO05D003443 9.4e-06 53.9 141 29.1


User provided reference genes

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