Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p25830 Brassica napus HOM05D007441 ORTHO05D009501 2.5e-96 355.5 190 100.0
BolC5t31303H Brassica oleracea HOM05D007441 ORTHO05D009501 3.5e-90 335.1 190 95.8
BcaC05g26717 Brassica carinata HOM05D007441 ORTHO05D009501 7.5e-85 317.4 189 91.0
BcaC05g26720 Brassica carinata HOM05D007441 ORTHO05D009501 4.6e-82 308.1 190 90.0
A09p38770 Brassica napus HOM05D007441 ORTHO05D009501 9.8e-77 290.4 190 85.8
BraA09t39385Z Brassica rapa HOM05D007441 ORTHO05D009501 9.8e-77 290.4 190 85.8
Sp1g23350 Schrenkiella parvula HOM05D007441 ORTHO05D009501 2.3e-70 269.2 186 80.1
Thhalv10008862m.g Eutrema salsugineum HOM05D007441 ORTHO05D009501 1.4e-67 260.0 191 76.4
AL1G40490 Arabidopsis lyrata HOM05D007441 ORTHO05D009501 9.2e-67 257.3 188 76.1
CARHR026680 Cardamine hirsuta HOM05D007441 ORTHO05D009501 3.0e-65 252.3 196 71.9
AT1G24450 Arabidopsis thaliana HOM05D007441 ORTHO05D009501 1.1e-64 250.4 191 74.9
Carub.0001s2566 Capsella rubella HOM05D007441 ORTHO05D009501 1.5e-64 250.0 191 75.4
THA.LOC104809273 Tarenaya hassleriana HOM05D007441 ORTHO05D009501 1.6e-58 229.9 183 68.3
BcaC05g26525 Brassica carinata HOM05D007441 ORTHO05D009501 1.3e-57 226.9 124 96.0
Aa31LG7G9580 Aethionema arabicum HOM05D007441 ORTHO05D009501 2.2e-52 209.5 176 67.0
Duzib205G0170 Durio zibethinus HOM05D007441 ORTHO05D009501 5.1e-49 198.4 188 60.6
Ciclev10022460m.g Citrus clementina HOM05D007441 ORTHO05D009501 6.2e-47 191.4 170 60.6
Glyma.17G091300 Glycine max HOM05D007441 ORTHO05D009501 6.2e-47 191.4 171 56.7
Duzib084G0400 Durio zibethinus HOM05D007441 ORTHO05D009501 4.0e-46 188.7 179 55.3
FAN18G4363 Fragaria x ananassa HOM05D007441 ORTHO05D009501 5.3e-46 188.3 181 55.8
VMungo1215G1307 Vigna mungo HOM05D007441 ORTHO05D009501 1.2e-45 187.2 141 63.1
FvH4_5g05090 Fragaria vesca HOM05D007441 ORTHO05D009501 1.5e-45 186.8 181 55.2
Lj4g0018861 Lotus japonicus HOM05D007441 ORTHO05D009501 2.0e-45 186.4 171 57.3
Phvul.003G198700 Phaseolus vulgaris HOM05D007441 ORTHO05D009501 4.5e-45 185.3 171 58.5
Prupe.5G176500 Prunus persica HOM05D007441 ORTHO05D009501 1.3e-44 183.7 165 60.6
GSVIVG01007790001 Vitis vinifera HOM05D007441 ORTHO05D009501 1.3e-44 183.7 175 59.4
CSS0037538 Camellia sinensis var. sinensis HOM05D007441 ORTHO05D009501 1.7e-44 183.3 140 64.3
RcHm_v2.0_Chr7g0193911 Rosa chinensis HOM05D007441 ORTHO05D009501 1.7e-44 183.3 141 64.5
FAN04G2715 Fragaria x ananassa HOM05D007441 ORTHO05D009501 2.2e-44 183.0 181 53.6
FAN13G3077 Fragaria x ananassa HOM05D007441 ORTHO05D009501 2.2e-44 183.0 181 54.1
Thecc.03G008500 Theobroma cacao HOM05D007441 ORTHO05D009501 2.2e-44 183.0 148 62.2
Lj9A451T94 Lonicera japonica HOM05D007441 ORTHO05D009501 2.9e-44 182.6 143 62.2
Sc04g0001930 Simmondsia chinensis HOM05D007441 ORTHO05D009501 3.8e-44 182.2 139 64.0
QL10p013655 Quercus lobata HOM05D007441 ORTHO05D009501 1.9e-43 179.9 174 56.3
arahy.Tifrunner.gnm1.ann1.DR4P4T Arachis hypogaea HOM05D007441 ORTHO05D009501 4.2e-43 178.7 171 53.2
BcaC06g35265 Brassica carinata HOM05D007441 ORTHO05D009501 5.5e-43 178.3 110 85.5
arahy.Tifrunner.gnm1.ann1.01HJP6 Arachis hypogaea HOM05D007441 ORTHO05D009501 9.3e-43 177.6 171 52.6
AUR62030992 Chenopodium quinoa HOM05D007441 ORTHO05D009501 1.6e-42 176.8 172 55.2
AUR62008240 Chenopodium quinoa HOM05D007441 ORTHO05D009501 2.1e-42 176.4 179 54.2
PGR044G0794 Punica granatum HOM05D007441 ORTHO05D009501 2.1e-42 176.4 175 57.7
Actinidia19093 Actinidia chinensis HOM05D007441 ORTHO05D009501 2.7e-42 176.0 183 53.0
C07p18070 Brassica napus HOM05D007441 ORTHO05D009501 2.7e-42 176.0 110 84.5
MD14G1183800 Malus domestica HOM05D007441 ORTHO05D009501 3.5e-42 175.6 141 61.0
Psat4g057000 Pisum sativum HOM05D007441 ORTHO05D009501 3.5e-42 175.6 140 61.4
Potri.012G078400 Populus trichocarpa HOM05D007441 ORTHO05D009501 3.5e-42 175.6 161 57.1
Ca_21905_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 4.6e-42 175.3 140 62.1
Ca_21923_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 4.6e-42 175.3 140 62.1
Medtr4g106640 Medicago truncatula HOM05D007441 ORTHO05D009501 4.6e-42 175.3 150 60.7
Hund02733 Selenicereus undatus HOM05D007441 ORTHO05D009501 4.6e-42 175.3 170 55.9
Hma1.2p1_0176F.1_g077710 Hydrangea macrophylla HOM05D007441 ORTHO05D009501 1.3e-41 173.7 143 61.5
Lalb_Chr07g0182651 Lupinus albus HOM05D007441 ORTHO05D009501 1.3e-41 173.7 179 55.3
Sabra12G0056200 Salix brachista HOM05D007441 ORTHO05D009501 2.3e-41 172.9 163 56.4
Lsat_1_v5_gn_1_26521 Lactuca sativa HOM05D007441 ORTHO05D009501 3.9e-41 172.2 172 52.9
ECA247G2439 Erigeron canadensis HOM05D007441 ORTHO05D009501 8.7e-41 171.0 171 51.5
Oeu016356.1 Olea europaea HOM05D007441 ORTHO05D009501 2.5e-40 169.5 139 59.7
CiPaw.11G029400 Carya illinoinensis HOM05D007441 ORTHO05D009501 4.3e-40 168.7 183 52.5
Manes.06G102900 Manihot esculenta HOM05D007441 ORTHO05D009501 4.3e-40 168.7 170 53.5
Atru.chr9.2436 Acer truncatum HOM05D007441 ORTHO05D009501 7.4e-40 167.9 174 55.2
TPR.G37479 Trifolium pratense HOM05D007441 ORTHO05D009501 7.4e-40 167.9 141 60.3
PGSC0003DMG400024487 Solanum tuberosum HOM05D007441 ORTHO05D009501 1.3e-39 167.2 177 54.2
TWI15G0162 Tripterygium wilfordii HOM05D007441 ORTHO05D009501 2.1e-39 166.4 189 52.9
EL10Ac5g10787 Beta vulgaris HOM05D007441 ORTHO05D009501 4.8e-39 165.2 128 65.6
Dinv20676 Davidia involucrata HOM05D007441 ORTHO05D009501 6.2e-39 164.9 180 51.1
Aqoxy3G03040 Aquilegia oxysepala HOM05D007441 ORTHO05D009501 8.1e-39 164.5 140 60.7
Cpa.g.sc124.33 Carica papaya HOM05D007441 ORTHO05D009501 8.1e-39 164.5 171 53.2
HanXRQChr02g0037211 Helianthus annuus HOM05D007441 ORTHO05D009501 1.4e-38 163.7 179 51.4
Solyc03g114120.3 Solanum lycopersicum HOM05D007441 ORTHO05D009501 1.8e-38 163.3 177 53.1
Potri.015G073900 Populus trichocarpa HOM05D007441 ORTHO05D009501 3.1e-38 162.5 172 55.2
CANSAT80G2614 Cannabis sativa HOM05D007441 ORTHO05D009501 5.3e-38 161.8 145 58.6
Sopen03g033180 Solanum pennellii HOM05D007441 ORTHO05D009501 9.0e-38 161.0 177 52.5
Nitab4.5_0006831g0010 Nicotiana tabacum HOM05D007441 ORTHO05D009501 1.2e-37 160.6 176 53.4
SGA_v2.0_scaffold90G27976 Striga asiatica HOM05D007441 ORTHO05D009501 1.5e-37 160.2 140 59.3
Rhsim12G0163200 Rhododendron simsii HOM05D007441 ORTHO05D009501 4.5e-37 158.7 162 51.2
PSO832G4588 Papaver somniferum HOM05D007441 ORTHO05D009501 6.5e-36 154.8 170 49.4
TAR622G1175 Trochodendron aralioides HOM05D007441 ORTHO05D009501 8.4e-36 154.5 180 50.0
SalBow5G3166 Salvia bowleyana HOM05D007441 ORTHO05D009501 1.1e-35 154.1 138 57.2
BolC7t42316H Brassica oleracea HOM05D007441 ORTHO05D009501 2.5e-35 152.9 105 77.1
Nitab4.5_0010542g0040 Nicotiana tabacum HOM05D007441 ORTHO05D001268 5.5e-35 151.8 169 53.3
MSTRG.23109 Avicennia marina HOM05D007441 ORTHO05D009501 7.1e-35 151.4 143 52.4
AUR62029952 Chenopodium quinoa HOM05D007441 ORTHO05D009501 2.7e-34 149.4 131 58.0
Haze_07488 Corylus avellana HOM05D007441 ORTHO05D009501 3.0e-33 146.0 175 50.9
Nn4g22840 Nelumbo nucifera HOM05D007441 ORTHO05D009501 5.1e-33 145.2 171 46.8
CAN.G4872.1 Capsicum annuum HOM05D007441 ORTHO05D009501 6.7e-33 144.8 159 55.3
CAN.G781.35 Capsicum annuum HOM05D007441 ORTHO05D009501 1.9e-32 143.3 126 59.5
DCAR_031307 Daucus carota HOM05D007441 ORTHO05D009501 3.3e-32 142.5 113 63.7
ATR1149G031 Amborella trichopoda HOM05D007441 ORTHO05D009501 8.4e-28 127.9 169 45.6
Peaxi162Scf00017g00269 Petunia axillaris HOM05D007441 ORTHO05D009501 8.4e-28 127.9 114 56.1
MBI15_g31106_MAGBIO Magnolia biondii HOM05D007441 ORTHO05D009501 6.1e-26 121.7 116 53.4
Actinidia34944 Actinidia chinensis HOM05D007441 ORTHO05D009501 4.8e-23 112.1 80 62.5
Zm00001eb210540 Zea mays HOM05D007441 ORTHO05D009501 1.4e-22 110.5 140 42.1
AUR62039786 Chenopodium quinoa HOM05D007441 ORTHO05D009501 6.9e-22 108.2 119 50.4
Dinv09163 Davidia involucrata HOM05D007441 ORTHO05D009501 5.9e-21 105.1 88 59.1
COL.COLO4_16923 Corchorus olitorius HOM05D007441 ORTHO05D009501 1.1e-19 100.9 92 53.3
AUR62040474 Chenopodium quinoa HOM05D007441 ORTHO05D009501 3.6e-18 95.9 131 45.0
Medtr4g079220 Medicago truncatula HOM05D007441 ORTHO05D009501 2.0e-16 90.1 77 64.9
CAN.G781.34 Capsicum annuum HOM05D007441 ORTHO05D009501 1.3e-15 87.4 75 57.3
SMO118G0028 Selaginella moellendorffii HOM05D007441 ORTHO05D009501 8.2e-15 84.7 123 35.8
Migut.I00040 Erythranthe guttata HOM05D007441 ORTHO05D009501 7.7e-13 78.2 68 50.0
Os03g0854400 Oryza sativa ssp. japonica HOM05D007441 ORTHO05D009501 1.0e-12 77.8 168 34.5
SEGI_24388 Sequoiadendron giganteum HOM05D007441 ORTHO05D009501 8.5e-12 74.7 112 40.2
HPP92_004711 Vanilla planifolia HOM05D007441 ORTHO05D009501 1.0e-09 67.8 102 41.2


User provided reference genes

Program Settings