Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26482 Brassica carinata HOM05D000028 ORTHO05D011789 2.6e-24 114.8 67 100.0
C05p25260 Brassica napus HOM05D000028 ORTHO05D011789 2.6e-24 114.8 67 100.0
BolC5t31261H Brassica oleracea HOM05D000028 ORTHO05D011789 1.3e-23 112.5 67 98.5
A09p39100 Brassica napus HOM05D000028 ORTHO05D011789 5.4e-22 107.1 66 95.5
Thhalv10009768m.g Eutrema salsugineum HOM05D000028 ORTHO05D001343 4.6e-21 104.0 65 87.7
BraA09t39410Z Brassica rapa HOM05D000028 ORTHO05D011789 1.8e-20 102.1 68 92.6
BcaC05g26688 Brassica carinata HOM05D000028 ORTHO05D011789 5.6e-19 97.1 60 95.0
C07p18410 Brassica napus HOM05D000028 ORTHO05D011789 3.6e-18 94.4 65 83.1
Sp1g23010 Schrenkiella parvula HOM05D000028 ORTHO05D001343 4.8e-18 94.0 61 86.9
BolC7t42352H Brassica oleracea HOM05D000028 ORTHO05D011789 1.5e-16 89.0 65 80.0
CARHR026280 Cardamine hirsuta HOM05D000028 ORTHO05D001343 1.7e-15 85.5 61 78.7
Thhalv10009731m.g Eutrema salsugineum HOM05D000028 ORTHO05D001343 2.2e-15 85.1 61 80.3
BcaB03g14024 Brassica carinata HOM05D000028 ORTHO05D001343 3.3e-11 71.2 54 81.5
BcaC06g35233 Brassica carinata HOM05D000739 ORTHO05D011789 1.4e-09 65.9 50 76.0
HanXRQChr03g0067661 Helianthus annuus HOM05D000028 ORTHO05D011789 3.1e-09 64.7 55 58.2
Manes.10G036900 Manihot esculenta HOM05D000028 ORTHO05D001343 1.5e-08 62.4 60 48.3
PSO541G5981 Papaver somniferum HOM05D000028 ORTHO05D001343 1.5e-08 62.4 59 49.2
Cc02_g22030 Coffea canephora HOM05D000028 ORTHO05D001343 2.0e-08 62.0 57 52.6
Nitab4.5_0005014g0060 Nicotiana tabacum HOM05D000028 ORTHO05D001343 2.0e-08 62.0 60 50.0
arahy.Tifrunner.gnm1.ann1.IHD3AR Arachis hypogaea HOM05D000028 ORTHO05D001343 3.4e-08 61.2 57 54.4
MD11G1290000 Malus domestica HOM05D000028 ORTHO05D001343 3.4e-08 61.2 58 50.0
PSO675G2414 Papaver somniferum HOM05D000028 ORTHO05D001343 3.4e-08 61.2 59 47.5
Aqoxy6G00374 Aquilegia oxysepala HOM05D000028 ORTHO05D001343 5.8e-08 60.5 58 51.7
Duzib052G0104 Durio zibethinus HOM05D000028 ORTHO05D001343 5.8e-08 60.5 60 50.0
QL11p018927 Quercus lobata HOM05D000028 ORTHO05D001343 5.8e-08 60.5 58 51.7
SalBow6G2255 Salvia bowleyana HOM05D000028 ORTHO05D001343 5.8e-08 60.5 60 48.3
arahy.Tifrunner.gnm1.ann1.A5NKXK Arachis hypogaea HOM05D000028 ORTHO05D001343 7.6e-08 60.1 57 54.4
Dinv24248 Davidia involucrata HOM05D000028 ORTHO05D001343 7.6e-08 60.1 60 53.3
FvH4_5g30370 Fragaria vesca HOM05D000028 ORTHO05D001343 7.6e-08 60.1 57 54.4
FAN18G4582 Fragaria x ananassa HOM05D000028 ORTHO05D001343 7.6e-08 60.1 57 54.4
TAR381G0121 Trochodendron aralioides HOM05D000028 ORTHO05D001343 7.6e-08 60.1 59 49.2
Psat1g219120 Pisum sativum HOM05D000028 ORTHO05D001343 1.0e-07 59.7 57 50.9
THA.LOC104808075 Tarenaya hassleriana HOM05D000028 ORTHO05D001343 1.0e-07 59.7 57 54.4
FAN04G2300 Fragaria x ananassa HOM05D000028 ORTHO05D001343 1.3e-07 59.3 57 54.4
MD15G1417300 Malus domestica HOM05D000028 ORTHO05D001343 1.3e-07 59.3 58 50.0
Thecc.01G120200 Theobroma cacao HOM05D000028 ORTHO05D001343 1.3e-07 59.3 60 55.0
TPR.G19720 Trifolium pratense HOM05D000028 ORTHO05D001343 1.3e-07 59.3 60 46.7
Atru.chr6.965 Acer truncatum HOM05D000028 ORTHO05D001343 1.7e-07 58.9 58 48.3
Atru.chr6.968 Acer truncatum HOM05D000028 ORTHO05D001343 1.7e-07 58.9 59 49.2
Ciclev10003133m.g Citrus clementina HOM05D000028 ORTHO05D001343 1.7e-07 58.9 59 50.8
FAN13G1724 Fragaria x ananassa HOM05D000028 ORTHO05D011789 1.7e-07 58.9 57 52.6
MD08G1224300 Malus domestica HOM05D000028 ORTHO05D001343 1.7e-07 58.9 58 50.0
Sc05g0004880 Simmondsia chinensis HOM05D000028 ORTHO05D001343 1.7e-07 58.9 59 47.5
TAR628G0815 Trochodendron aralioides HOM05D000028 ORTHO05D001343 1.7e-07 58.9 60 45.0
EL10Ac7g17217 Beta vulgaris HOM05D000028 ORTHO05D001343 2.2e-07 58.5 62 48.4
Cpa.g.sc2.42 Carica papaya HOM05D000028 ORTHO05D001343 2.2e-07 58.5 55 50.9
CiPaw.07G026300 Carya illinoinensis HOM05D000028 ORTHO05D001343 2.2e-07 58.5 57 49.1
Dinv19336 Davidia involucrata HOM05D000028 ORTHO05D001343 2.2e-07 58.5 58 50.0
FAN08G0110 Fragaria x ananassa HOM05D000028 ORTHO05D001343 2.2e-07 58.5 57 54.4
Lj6g0018913 Lotus japonicus HOM05D000028 ORTHO05D001343 2.2e-07 58.5 60 46.7
MD08G1223600 Malus domestica HOM05D000028 ORTHO05D001343 2.2e-07 58.5 58 48.3
SalBow6G5434 Salvia bowleyana HOM05D000028 ORTHO05D001343 2.2e-07 58.5 60 46.7
Thecc.02G042800 Theobroma cacao HOM05D000028 ORTHO05D001343 2.2e-07 58.5 60 46.7
CSS0015677 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D001343 2.9e-07 58.2 58 51.7
Ciclev10003704m.g Citrus clementina HOM05D000028 ORTHO05D001343 2.9e-07 58.2 60 48.3
Eucgr.G00639 Eucalyptus grandis HOM05D000028 ORTHO05D001343 2.9e-07 58.2 56 53.6
Lj3g0026727 Lotus japonicus HOM05D000028 ORTHO05D001343 2.9e-07 58.2 60 50.0
Actinidia00230 Actinidia chinensis HOM05D000028 ORTHO05D001343 3.8e-07 57.8 58 53.4
CiPaw.07G026200 Carya illinoinensis HOM05D000028 ORTHO05D001343 3.8e-07 57.8 57 49.1
COL.COLO4_22408 Corchorus olitorius HOM05D000028 ORTHO05D001343 3.8e-07 57.8 59 50.8
Gohir.D11G058100 Gossypium hirsutum HOM05D000028 ORTHO05D001343 3.8e-07 57.8 56 57.1
Gorai.007G063300 Gossypium raimondii HOM05D000028 ORTHO05D001343 3.8e-07 57.8 56 57.1
Lj4g0010118 Lotus japonicus HOM05D000028 ORTHO05D001343 3.8e-07 57.8 60 51.7
Oeu000652.2 Olea europaea HOM05D000028 ORTHO05D001343 3.8e-07 57.8 58 46.6
TWI14G0210 Tripterygium wilfordii HOM05D000028 ORTHO05D001343 3.8e-07 57.8 60 48.3
CANSAT11G1233 Cannabis sativa HOM05D000028 ORTHO05D001343 4.9e-07 57.4 56 48.2
HanXRQChr03g0067651 Helianthus annuus HOM05D000028 ORTHO05D001343 4.9e-07 57.4 56 53.6
Manes.07G012300 Manihot esculenta HOM05D000028 ORTHO05D001343 4.9e-07 57.4 58 50.0
Oeu012732.2 Olea europaea HOM05D000028 ORTHO05D001343 4.9e-07 57.4 60 48.3
Peaxi162Scf00320g00512 Petunia axillaris HOM05D000028 ORTHO05D001343 4.9e-07 57.4 58 48.3
HPP92_003210 Vanilla planifolia HOM05D000028 ORTHO05D001343 4.9e-07 57.4 63 46.0
Atru.chr6.972 Acer truncatum HOM05D000028 ORTHO05D001343 6.5e-07 57.0 59 47.5
Glyma.08G182500 Glycine max HOM05D000028 ORTHO05D001343 6.5e-07 57.0 60 46.7
Gohir.A11G054500 Gossypium hirsutum HOM05D000028 ORTHO05D001343 6.5e-07 57.0 56 55.4
Medtr2g007990 Medicago truncatula HOM05D000028 ORTHO05D001343 6.5e-07 57.0 60 43.3
Nn5g28738 Nelumbo nucifera HOM05D000028 ORTHO05D001343 6.5e-07 57.0 60 46.7
SGA_v2.0_scaffold45G17273 Striga asiatica HOM05D000028 ORTHO05D001343 6.5e-07 57.0 60 51.7
HPP92_025027 Vanilla planifolia HOM05D000028 ORTHO05D001343 6.5e-07 57.0 61 44.3
HPP92_025032 Vanilla planifolia HOM05D000028 ORTHO05D001343 6.5e-07 57.0 61 44.3
VMungo0540G0917 Vigna mungo HOM05D000028 ORTHO05D001343 6.5e-07 57.0 60 48.3
ECA240G0912 Erigeron canadensis HOM05D000028 ORTHO05D001343 8.4e-07 56.6 58 50.0
Eucgr.G00640 Eucalyptus grandis HOM05D000028 ORTHO05D001343 8.4e-07 56.6 56 48.2
Prupe.1G561200 Prunus persica HOM05D000028 ORTHO05D001343 8.4e-07 56.6 56 51.8
Rhsim11G0133100 Rhododendron simsii HOM05D000028 ORTHO05D001343 8.4e-07 56.6 58 51.7
RcHm_v2.0_Chr7g0224831 Rosa chinensis HOM05D000028 ORTHO05D001343 8.4e-07 56.6 58 46.6
vmacro01797 Vaccinium macrocarpon HOM05D000028 ORTHO05D001343 8.4e-07 56.6 56 55.4
CANSAT11G1807 Cannabis sativa HOM05D000028 ORTHO05D001343 1.1e-06 56.2 57 49.1
Duzib132G0996 Durio zibethinus HOM05D000028 ORTHO05D001343 1.1e-06 56.2 60 50.0
Lsat_1_v5_gn_9_116601 Lactuca sativa HOM05D000028 ORTHO05D001343 1.1e-06 56.2 55 52.7
Lalb_Chr20g0123281 Lupinus albus HOM05D000028 ORTHO05D001343 1.1e-06 56.2 60 48.3
Sed0012499 Sechium edule HOM05D000028 ORTHO05D001343 1.1e-06 56.2 53 52.8
GSVIVG01026597001 Vitis vinifera HOM05D000028 ORTHO05D001343 1.1e-06 56.2 62 48.4
MSTRG.27832 Avicennia marina HOM05D000028 ORTHO05D001343 1.4e-06 55.8 60 51.7
Duzib052G0500 Durio zibethinus HOM05D000028 ORTHO05D001343 1.4e-06 55.8 59 45.8
Glyma.15G049900 Glycine max HOM05D000028 ORTHO05D001343 1.4e-06 55.8 60 45.0
Gohir.D01G166700 Gossypium hirsutum HOM05D000028 ORTHO05D001343 1.4e-06 55.8 60 46.7
Gorai.002G207200 Gossypium raimondii HOM05D000028 ORTHO05D001343 1.4e-06 55.8 60 46.7
arahy.Tifrunner.gnm1.ann1.R6PW16 Arachis hypogaea HOM05D000028 ORTHO05D001343 1.9e-06 55.5 58 48.3
DCAR_001812 Daucus carota HOM05D000028 ORTHO05D001343 1.9e-06 55.5 60 46.7
Migut.N01019 Erythranthe guttata HOM05D000028 ORTHO05D001343 1.9e-06 55.5 58 50.0
Gohir.D02G231800 Gossypium hirsutum HOM05D000028 ORTHO05D001343 1.9e-06 55.5 62 45.2
Gorai.005G259500 Gossypium raimondii HOM05D000028 ORTHO05D001343 1.9e-06 55.5 62 45.2
Psat1g218800 Pisum sativum HOM05D000028 ORTHO05D001343 1.9e-06 55.5 59 49.2
TPR.G7400 Trifolium pratense HOM05D000028 ORTHO05D001343 1.9e-06 55.5 60 46.7
Actinidia38957 Actinidia chinensis HOM05D000028 ORTHO05D001343 2.5e-06 55.1 58 50.0
arahy.Tifrunner.gnm1.ann1.Y52ATU Arachis hypogaea HOM05D000028 ORTHO05D001343 2.5e-06 55.1 57 49.1
CiPaw.07G026500 Carya illinoinensis HOM05D000028 ORTHO05D001343 2.5e-06 55.1 57 47.4
ECA234G3730 Erigeron canadensis HOM05D000028 ORTHO05D001343 2.5e-06 55.1 55 50.9
Lj9A316T44 Lonicera japonica HOM05D000028 ORTHO05D001343 2.5e-06 55.1 60 43.3
Sabra01G0082000 Salix brachista HOM05D000028 ORTHO05D001343 2.5e-06 55.1 57 47.4
ATR0820G186 Amborella trichopoda HOM05D000028 ORTHO05D001343 3.2e-06 54.7 57 47.4
COL.COLO4_22403 Corchorus olitorius HOM05D000028 ORTHO05D001343 3.2e-06 54.7 55 52.7
COL.COLO4_22406 Corchorus olitorius HOM05D000028 ORTHO05D001343 3.2e-06 54.7 58 50.0
Duzib132G0512 Durio zibethinus HOM05D000028 ORTHO05D001343 3.2e-06 54.7 59 47.5
FvH4_5g30371 Fragaria vesca HOM05D000028 ORTHO05D001343 3.2e-06 54.7 58 44.8
FAN08G2857 Fragaria x ananassa HOM05D000028 ORTHO05D001343 3.2e-06 54.7 58 44.8
FAN18G2739 Fragaria x ananassa HOM05D000028 ORTHO05D001343 3.2e-06 54.7 58 44.8
Gohir.A03G210200 Gossypium hirsutum HOM05D000028 ORTHO05D001343 3.2e-06 54.7 62 43.5
HanXRQChr03g0067671 Helianthus annuus HOM05D000028 ORTHO05D001343 3.2e-06 54.7 58 51.7
Medtr2g027030 Medicago truncatula HOM05D000028 ORTHO05D001343 3.2e-06 54.7 57 47.4
Thecc.01G120300 Theobroma cacao HOM05D000028 ORTHO05D001343 3.2e-06 54.7 56 48.2
CAN.G54.1 Capsicum annuum HOM05D000028 ORTHO05D001343 4.2e-06 54.3 62 45.2
CiPaw.07G026600 Carya illinoinensis HOM05D000028 ORTHO05D001343 4.2e-06 54.3 57 49.1
DCAR_029226 Daucus carota HOM05D000028 ORTHO05D001343 4.2e-06 54.3 61 45.9
Lj4g0000382 Lotus japonicus HOM05D000028 ORTHO05D001343 4.2e-06 54.3 60 51.7
Os04g0687800 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D001343 4.2e-06 54.3 61 49.2
Phvul.006G210000 Phaseolus vulgaris HOM05D000028 ORTHO05D001343 4.2e-06 54.3 60 45.0
Psat7g095920 Pisum sativum HOM05D000028 ORTHO05D001343 4.2e-06 54.3 57 56.1
Potri.001G108600 Populus trichocarpa HOM05D000028 ORTHO05D001343 4.2e-06 54.3 57 45.6
PGSC0003DMG400029748 Solanum tuberosum HOM05D000028 ORTHO05D001343 4.2e-06 54.3 57 50.9
Ca_00104_v3 Cicer arietinum L. HOM05D000028 ORTHO05D001343 5.5e-06 53.9 56 48.2
VMungo0540G1722 Vigna mungo HOM05D000028 ORTHO05D001343 5.5e-06 53.9 57 49.1
CiPaw.06G150100 Carya illinoinensis HOM05D000028 ORTHO05D001343 7.1e-06 53.5 53 50.9
Cc02_g22010 Coffea canephora HOM05D000028 ORTHO05D001343 7.1e-06 53.5 60 46.7
Gohir.A01G175800 Gossypium hirsutum HOM05D000028 ORTHO05D001343 7.1e-06 53.5 60 45.0
Lj4g0027224 Lotus japonicus HOM05D000028 ORTHO05D001343 7.1e-06 53.5 57 54.4
PGR142G0666 Punica granatum HOM05D000028 ORTHO05D001343 7.1e-06 53.5 56 48.2
Solyc07g015910.4 Solanum lycopersicum HOM05D000028 ORTHO05D001343 7.1e-06 53.5 58 41.4
TPR.G31271 Trifolium pratense HOM05D000028 ORTHO05D011789 7.1e-06 53.5 57 47.4
FAN13G2321 Fragaria x ananassa HOM05D000028 ORTHO05D001343 9.3e-06 53.1 57 43.9
MD17G1230500 Malus domestica HOM05D000028 ORTHO05D001343 9.3e-06 53.1 61 47.5
Medtr2g007970 Medicago truncatula HOM05D000028 ORTHO05D001343 9.3e-06 53.1 60 45.0
Medtr4g094362 Medicago truncatula HOM05D000028 ORTHO05D001343 9.3e-06 53.1 55 52.7
PGSC0003DMG400029960 Solanum tuberosum HOM05D000028 ORTHO05D001343 9.3e-06 53.1 58 41.4


User provided reference genes

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