Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 0.0e+00 1075.1 522 100.0
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.3e-301 1038.9 522 96.7
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 4.3e-292 1007.3 522 93.3
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 4.3e-292 1007.3 522 93.3
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 3.1e-282 974.5 522 90.8
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 9.7e-260 899.8 520 83.3
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 8.8e-253 876.7 525 80.6
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 4.4e-252 874.4 522 84.3
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 8.0e-246 853.6 525 78.5
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 6.3e-243 844.0 526 78.1
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.9e-231 805.8 526 74.1
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 7.3e-207 724.2 524 67.9
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.4e-194 682.6 497 66.4
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 1.3e-174 617.1 525 58.1
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 3.1e-173 612.5 502 61.0
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 4.2e-170 602.1 522 59.0
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 3.9e-168 595.5 517 56.1
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 3.9e-168 595.5 471 62.2
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 6.7e-168 594.7 518 58.9
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 4.3e-167 592.0 514 57.0
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 9.7e-167 590.9 477 59.3
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 1.8e-165 586.6 536 52.6
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.1e-165 585.9 534 54.3
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 5.3e-165 585.1 516 55.4
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 1.5e-164 583.6 533 54.8
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.5e-164 582.0 492 57.3
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 1.3e-163 580.5 515 54.4
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.7e-163 580.1 516 55.2
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.2e-163 579.7 483 58.2
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 8.5e-163 577.8 520 55.4
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 8.5e-163 577.8 562 51.8
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 8.5e-163 577.8 474 60.8
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.1e-162 577.4 522 55.2
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.9e-162 576.6 518 55.4
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 2.5e-162 576.2 524 54.8
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 3.2e-162 575.9 493 57.6
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 4.2e-162 575.5 469 58.6
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 7.2e-162 574.7 473 61.1
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 9.4e-162 574.3 466 58.4
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 2.1e-161 573.2 474 59.3
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 4.7e-161 572.0 522 54.4
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 5.1e-160 568.5 477 58.5
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 5.1e-160 568.5 469 60.1
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 6.7e-160 568.2 473 59.0
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 8.8e-160 567.8 527 55.2
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 8.8e-160 567.8 471 60.7
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 2.0e-159 566.6 518 54.6
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 3.3e-159 565.8 459 57.7
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 2.8e-158 562.8 475 57.5
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 2.4e-157 559.7 523 53.9
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 4.1e-157 558.9 464 60.1
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 9.1e-157 557.8 469 59.5
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 1.2e-156 557.4 522 54.2
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 2.0e-156 556.6 517 54.4
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 1.7e-155 553.5 489 56.4
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 3.8e-155 552.4 474 56.8
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 5.0e-155 552.0 515 54.2
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 5.0e-155 552.0 488 55.1
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 6.5e-155 551.6 513 54.4
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 6.5e-155 551.6 355 77.5
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 6.5e-155 551.6 469 57.6
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 8.5e-155 551.2 486 56.2
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 4.2e-154 548.9 526 51.7
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 4.2e-154 548.9 472 56.8
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 9.4e-154 547.7 521 52.0
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 2.1e-153 546.6 486 56.0
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.1e-153 546.6 462 58.7
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 3.6e-153 545.8 494 53.6
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 6.1e-153 545.0 498 54.2
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 6.1e-153 545.0 478 55.9
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.8e-152 543.5 521 53.0
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 3.9e-152 542.3 595 48.7
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 5.2e-152 542.0 473 55.6
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 6.3e-150 535.0 472 56.6
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.4e-149 533.1 572 49.1
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 7.7e-148 528.1 572 49.0
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 2.2e-147 526.6 521 51.4
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 3.6e-145 519.2 485 54.8
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 3.6e-145 519.2 485 54.8
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.0e-144 515.8 516 52.7
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 3.7e-142 509.2 463 55.5
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 6.3e-142 508.4 472 53.0
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 8.3e-142 508.1 468 56.0
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.1e-141 507.7 487 50.9
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.6e-140 503.8 626 45.2
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.5e-140 502.3 468 54.7
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 4.2e-138 495.7 426 57.3
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 2.7e-137 493.0 487 49.1
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 1.4e-136 490.7 515 50.1
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.5e-135 487.3 470 53.2
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 9.1e-133 478.0 277 86.3
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.3e-131 474.2 474 50.4
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 6.6e-131 471.9 504 48.0
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 1.5e-130 470.7 379 60.4
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 8.0e-129 464.9 524 47.7
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 2.4e-96 357.1 353 51.6
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 1.7e-94 350.9 497 38.2
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 9.2e-93 345.1 498 40.0
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 9.2e-93 345.1 329 53.5
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 2.5e-90 337.0 489 36.8
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 6.0e-84 315.8 298 50.3
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.3e-83 314.7 289 54.3
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 3.9e-83 313.2 519 36.6
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 5.1e-83 312.8 297 53.2
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.6e-81 307.8 276 55.4
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 1.8e-80 304.3 276 55.1
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 9.3e-77 292.0 219 62.6
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 7.9e-76 288.9 264 54.9
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 1.9e-66 257.7 209 60.3
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 7.4e-58 229.2 355 37.7
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 2.9e-46 190.7 203 48.3
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.1e-32 145.6 85 76.5
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 3.1e-32 144.1 92 69.6
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 2.0e-23 114.8 76 64.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 2.1e-20 104.8 98 57.1
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.7e-17 95.1 114 46.5
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 2.2e-17 94.7 92 50.0
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 6.3e-17 93.2 93 45.2
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 8.3e-17 92.8 77 58.4
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.8e-16 91.7 111 45.9
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-13 82.4 53 71.7
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.5e-13 80.1 53 71.7
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 1.0e-11 75.9 40 85.0
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.4e-11 75.5 53 67.9
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.4e-11 75.5 53 67.9
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.0e-11 73.9 53 69.8
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 2.6e-10 71.2 240 25.8
Ca_29313_v3 Cicer arietinum L. HOM05D002042 ORTHO05D008431 9.8e-10 69.3 139 33.1
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 8.3e-09 66.2 76 42.1
MCO07G447 Micromonas commoda HOM05D020990 ORTHO05D028642 3.5e-07 60.8 231 23.8
PRCOL_00006080 Prasinoderma coloniale HOM05D002042 ORTHO05D003928 1.7e-06 58.5 109 33.0
Aa31LG1G25180 Aethionema arabicum HOM05D002042 ORTHO05D003928 2.9e-06 57.8 120 30.0
Thhalv10001542m.g Eutrema salsugineum HOM05D002042 ORTHO05D003928 2.9e-06 57.8 120 30.8
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.9e-06 57.8 171 22.8
Glyma.12G050800 Glycine max HOM05D002042 ORTHO05D003928 3.9e-06 57.4 123 30.1
Rhsim02G0082500 Rhododendron simsii HOM05D002042 ORTHO05D003928 3.9e-06 57.4 123 31.7
CARHR124980 Cardamine hirsuta HOM05D002042 ORTHO05D003928 6.6e-06 56.6 120 30.0
Glyma.11G126200 Glycine max HOM05D002042 ORTHO05D003928 6.6e-06 56.6 123 29.3
TWI38G1209 Tripterygium wilfordii HOM05D002042 ORTHO05D003928 6.6e-06 56.6 120 30.8


User provided reference genes

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