Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 0.0e+00 1172.1 614 100.0
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 0.0e+00 1161.7 614 96.4
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 0.0e+00 1144.0 619 97.6
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 0.0e+00 1142.9 619 97.4
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.4e-294 1013.8 626 85.6
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 8.4e-287 989.9 628 83.1
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.1e-286 989.6 628 83.3
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 9.3e-286 986.5 628 79.9
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 4.6e-285 984.2 628 79.1
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.9e-267 925.6 627 74.6
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 5.0e-255 884.4 623 70.9
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.1e-241 838.6 620 71.5
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.6e-229 799.7 608 66.0
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 8.3e-226 787.3 614 63.7
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.2e-224 783.5 607 65.1
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 5.9e-224 781.2 607 66.1
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 7.8e-224 780.8 601 68.2
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 3.8e-223 778.5 614 64.2
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.1e-222 776.9 610 68.0
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 2.5e-222 775.8 605 63.8
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 3.3e-222 775.4 629 63.0
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 5.6e-222 774.6 629 63.0
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 2.8e-221 772.3 614 64.3
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 8.0e-221 770.8 614 63.0
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.0e-220 770.4 616 66.6
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.0e-220 770.4 615 67.2
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 5.2e-220 768.1 606 67.0
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.0e-219 766.1 607 68.2
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.8e-219 764.6 610 64.1
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 7.5e-219 764.2 610 64.4
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.2e-218 762.7 608 67.1
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 2.9e-218 762.3 602 66.8
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.4e-217 760.0 597 63.5
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.4e-217 760.0 614 62.7
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 4.1e-217 758.4 625 61.3
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.6e-216 755.0 600 63.5
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 3.9e-215 751.9 604 63.9
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 7.3e-214 747.7 615 62.3
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 9.5e-214 747.3 608 62.3
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.6e-213 746.5 614 62.5
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.6e-213 746.5 615 62.3
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 8.0e-213 744.2 610 60.8
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-212 743.8 618 61.7
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 2.3e-212 742.7 607 64.7
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 4.0e-212 741.9 614 62.1
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.6e-211 739.2 622 62.1
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 3.7e-210 735.3 610 65.2
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 9.2e-209 730.7 616 61.4
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.6e-208 729.9 587 64.1
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 4.6e-208 728.4 616 60.6
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 5.1e-207 724.9 619 59.3
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 9.5e-206 720.7 620 63.5
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 5.2e-204 714.9 554 64.6
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.2e-203 713.8 619 59.3
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.5e-203 713.4 619 62.2
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.5e-203 713.4 620 59.7
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 3.4e-203 712.2 619 60.4
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 4.4e-203 711.8 621 59.9
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 5.8e-203 711.4 573 63.0
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 5.8e-203 711.4 622 58.0
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.3e-202 710.3 591 60.9
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.7e-202 709.9 600 60.2
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.9e-202 709.1 630 60.6
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.9e-202 709.1 608 60.9
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 4.9e-202 708.4 620 57.9
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 8.3e-202 707.6 592 58.6
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.9e-201 706.4 614 59.1
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.1e-201 704.5 626 61.7
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.1e-198 697.2 618 57.9
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 2.5e-198 696.0 597 58.3
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 3.3e-198 695.7 594 58.4
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 5.6e-198 694.9 614 57.5
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 5.6e-198 694.9 613 58.7
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 7.3e-198 694.5 621 56.4
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 2.8e-197 692.6 614 57.2
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.4e-196 690.3 604 58.8
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 5.2e-196 688.3 606 61.1
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 5.8e-195 684.9 603 60.7
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 7.6e-195 684.5 616 60.2
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.4e-193 680.2 604 57.8
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 2.4e-193 679.5 620 57.3
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.2e-192 677.2 626 60.1
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-191 673.7 661 53.1
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.6e-189 665.6 611 60.6
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.4e-188 663.7 633 58.9
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.1e-188 662.5 611 60.4
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 4.4e-187 658.7 637 53.8
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.2e-186 656.4 646 53.6
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 7.8e-184 647.9 642 54.2
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.9e-182 643.3 568 58.3
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 5.6e-182 641.7 730 49.6
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 8.1e-181 637.9 617 53.8
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.8e-180 636.7 656 51.7
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 3.2e-177 625.9 609 54.0
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 9.3e-177 624.4 730 47.5
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 5.5e-169 598.6 627 51.2
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 2.7e-168 596.3 606 55.6
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.8e-167 593.6 616 51.0
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.1e-164 584.3 505 59.4
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.4e-161 573.9 620 53.5
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 2.5e-161 573.2 621 53.0
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.7e-160 569.7 592 51.9
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 3.0e-159 566.2 615 53.0
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.9e-158 563.5 609 50.4
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.5e-142 510.8 619 49.9
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 4.1e-140 502.7 463 54.9
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.0e-127 461.5 413 57.4
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.7e-120 436.0 439 57.9
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.3e-113 413.3 415 53.7
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.6e-112 411.0 320 61.6
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.8e-109 400.2 334 58.7
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.1e-108 396.4 407 52.8
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.0e-106 389.4 399 52.6
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 5.2e-103 379.4 447 51.2
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.0e-100 369.0 414 49.3
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.0e-98 365.2 422 49.5
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.3e-98 364.0 422 48.8
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.5e-97 360.5 422 46.7
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.1e-95 353.6 399 48.6
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.3e-89 333.6 382 48.7
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-85 321.6 413 44.8
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 7.1e-84 315.8 566 34.3
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 2.1e-83 314.3 202 73.8
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 7.3e-81 305.8 558 33.2
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.6e-70 270.8 548 33.9
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.7e-67 260.8 513 31.6
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.0e-66 258.8 542 31.4
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 3.7e-56 223.8 207 57.0
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 1.1e-55 222.2 167 64.7
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 2.0e-54 218.0 260 48.5
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 2.5e-49 201.1 525 27.0
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 4.3e-49 200.3 165 60.0
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.3e-40 169.9 238 43.7
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.9e-38 163.3 238 43.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.9e-34 150.6 132 57.6
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.1e-33 149.1 133 60.9
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.3e-33 147.1 98 71.4
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 2.4e-31 141.4 220 40.9
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.2e-30 139.0 102 65.7
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 1.0e-29 136.0 86 76.7
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 6.1e-27 126.7 108 61.1
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 7.4e-25 119.8 89 60.7
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 9.1e-23 112.8 93 59.1
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 1.6e-22 112.1 70 80.0
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 1.6e-22 112.1 70 80.0
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 3.5e-22 110.9 89 57.3
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.7e-21 108.6 74 67.6
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 4.2e-20 104.0 69 76.8
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 6.1e-19 100.1 162 41.4
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.1e-19 100.1 98 52.0
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.5e-12 78.2 45 75.6
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.5e-12 78.2 45 75.6
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 9.4e-12 76.3 53 73.6
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.7e-11 73.9 48 70.8
Nitab4.5_0000345g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.1e-07 61.2 145 26.9
Peaxi162Scf00238g00023 Petunia axillaris HOM05D000001 ORTHO05D000003 9.1e-07 59.7 139 28.1
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 2.0e-06 58.5 172 28.5
Sopen09g022760 Solanum pennellii HOM05D000001 ORTHO05D000003 2.7e-06 58.2 139 28.1
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 4.5e-06 57.4 173 27.7
Solyc09g059575.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.9e-06 57.0 139 27.3
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 7.7e-06 56.6 159 27.7
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 7.7e-06 56.6 159 27.7
CAN.G260.5 Capsicum annuum HOM05D000001 ORTHO05D000003 7.7e-06 56.6 140 27.1


User provided reference genes

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