Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.4e-75 286.2 140 100.0
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 4.0e-75 284.6 140 99.3
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.7e-73 279.3 140 97.9
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 1.9e-69 265.8 140 92.9
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 9.5e-69 263.5 140 92.1
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 2.0e-63 245.7 140 86.4
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 1.0e-62 243.4 140 83.6
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 1.3e-62 243.0 140 83.6
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 1.3e-62 243.0 140 83.6
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 2.3e-62 242.3 142 83.1
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 3.0e-62 241.9 142 83.1
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 4.3e-61 238.0 139 83.5
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 9.5e-61 236.9 140 82.1
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.1e-59 233.4 136 82.4
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 4.0e-59 231.5 136 83.1
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 4.9e-57 224.6 140 78.6
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.4e-56 223.0 136 80.9
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 5.2e-51 204.5 114 88.6
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 9.9e-50 200.3 137 71.5
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 3.5e-47 191.8 139 68.3
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 6.0e-47 191.0 139 66.9
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 9.6e-45 183.7 132 69.7
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.9e-41 172.2 140 59.3
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 4.9e-41 171.4 136 63.2
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 4.2e-40 168.3 138 59.4
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 5.4e-40 167.9 138 58.7
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 7.1e-40 167.5 140 58.6
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 1.2e-39 166.8 137 58.4
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.6e-39 166.4 141 58.2
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 6.0e-39 164.5 133 60.2
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.3e-38 162.5 140 57.1
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 1.1e-37 160.2 137 58.4
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 5.6e-37 157.9 113 62.8
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 9.6e-37 157.1 139 58.3
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.3e-36 156.8 133 59.4
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 8.1e-36 154.1 133 56.4
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 2.4e-35 152.5 118 59.3
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.3e-35 151.4 138 55.1
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.3e-35 151.4 138 55.1
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 5.3e-35 151.4 142 56.3
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 6.9e-35 151.0 116 60.3
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 6.9e-35 151.0 116 62.1
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 9.0e-35 150.6 137 53.3
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 9.0e-35 150.6 137 53.3
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 2.0e-34 149.4 137 57.7
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 2.6e-34 149.1 133 54.9
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.5e-34 148.3 139 56.1
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 4.5e-34 148.3 136 57.4
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 5.8e-34 147.9 138 52.2
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.2e-33 146.0 137 51.8
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.2e-33 146.0 137 52.6
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.4e-32 143.3 137 53.3
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.9e-32 142.9 141 53.2
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 3.2e-32 142.1 120 58.3
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 4.2e-32 141.7 140 55.0
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 4.2e-32 141.7 140 55.0
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.2e-31 140.2 143 52.4
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.1e-31 139.4 140 53.6
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.1e-31 139.4 132 53.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.1e-31 139.4 151 51.7
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 4.6e-31 138.3 137 52.6
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 4.6e-31 138.3 141 53.2
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 7.9e-31 137.5 118 55.9
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 1.0e-30 137.1 142 52.8
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.3e-30 136.7 138 52.2
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.8e-30 136.3 132 56.1
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 2.3e-30 136.0 139 48.2
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 5.1e-30 134.8 97 67.0
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 5.1e-30 134.8 138 52.9
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.1e-29 133.7 121 56.2
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.5e-29 133.3 129 51.2
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.9e-29 132.9 138 50.7
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.9e-29 132.9 120 60.0
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 2.5e-29 132.5 139 52.5
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.5e-29 132.5 133 51.1
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 4.3e-29 131.7 139 54.0
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 5.6e-29 131.3 129 51.2
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.3e-28 130.2 139 52.5
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 2.1e-28 129.4 93 64.5
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 3.6e-28 128.6 140 51.4
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 3.6e-28 128.6 106 56.6
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 6.2e-28 127.9 97 59.8
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.8e-27 126.3 132 51.5
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.4e-27 125.9 131 52.7
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.9e-27 124.4 122 52.5
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.2e-26 123.6 113 56.6
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.2e-26 123.6 118 55.1
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.6e-26 122.5 139 51.1
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 9.9e-26 120.6 119 54.6
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.3e-25 120.2 115 51.3
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.2e-25 119.4 66 78.8
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 2.9e-25 119.0 186 40.9
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 3.8e-25 118.6 133 45.1
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 4.9e-25 118.2 129 51.2
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 6.4e-25 117.9 135 46.7
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 6.4e-25 117.9 135 46.7
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 6.4e-25 117.9 130 46.9
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.4e-24 116.7 92 59.8
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.4e-24 116.7 122 53.3
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 2.4e-24 115.9 115 58.3
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 3.2e-24 115.5 60 83.3
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 3.2e-24 115.5 76 67.1
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.2e-24 115.5 96 57.3
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 7.1e-24 114.4 139 46.0
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 9.3e-24 114.0 113 53.1
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 9.3e-24 114.0 173 41.6
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 9.3e-24 114.0 92 59.8
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 9.3e-24 114.0 97 57.7
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.2e-23 113.6 130 45.4
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 2.1e-23 112.8 95 62.1
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 3.5e-23 112.1 62 77.4
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 6.0e-23 111.3 99 52.5
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 7.9e-23 110.9 114 50.9
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.0e-22 110.5 64 78.1
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 1.0e-22 110.5 97 54.6
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.0e-22 110.5 59 76.3
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.3e-22 109.4 130 44.6
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.3e-22 109.4 159 45.3
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 6.7e-22 107.8 116 52.6
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 6.7e-22 107.8 116 52.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.9e-21 106.3 61 73.8
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 1.9e-21 106.3 76 63.2
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 2.5e-21 105.9 112 51.8
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 3.3e-21 105.5 97 57.7
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 4.3e-21 105.1 62 67.7
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 9.6e-21 104.0 107 46.7
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 2.4e-19 99.4 105 46.7
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 9.0e-19 97.4 61 68.9
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 1.2e-18 97.1 52 80.8
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 2.0e-18 96.3 72 63.9
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 2.6e-18 95.9 115 49.6
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 7.6e-18 94.4 117 42.7
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 3.8e-17 92.0 116 47.4
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 7.9e-15 84.3 116 47.4
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 2.3e-14 82.8 51 66.7
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 8.7e-14 80.9 61 60.7
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 4.3e-13 78.6 50 60.0
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 4.3e-13 78.6 53 58.5
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.3e-12 77.0 134 38.8
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 1.6e-12 76.6 49 65.3
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.8e-12 75.9 105 44.8
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 6.3e-12 74.7 98 45.9
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 2.4e-11 72.8 48 72.9
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 3.4e-10 68.9 76 50.0
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 5.9e-10 68.2 93 40.9
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.5e-08 62.8 83 42.2
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 7.2e-08 61.2 92 42.4
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 2.3e-06 56.2 37 67.6
CBR_g39054 Chara braunii HOM05D004542 ORTHO05D005380 3.9e-06 55.5 60 40.0


User provided reference genes

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