Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.0e-88 330.1 172 100.0
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 8.3e-75 283.9 152 98.7
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 3.6e-25 119.0 60 90.0
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 1.3e-24 117.1 60 90.0
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 1.3e-24 117.1 60 90.0
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 1.3e-24 117.1 60 90.0
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 2.3e-24 116.3 60 88.3
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 6.3e-22 108.2 59 83.1
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.4e-21 107.1 59 81.4
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 2.4e-21 106.3 59 81.4
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 3.1e-21 105.9 59 83.1
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 4.1e-21 105.5 59 81.4
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 9.1e-21 104.4 58 81.0
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 2.2e-19 99.8 59 76.3
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 7.9e-17 91.3 57 71.9
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.0e-16 90.9 54 74.1
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 5.7e-15 85.1 59 66.1
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 7.4e-15 84.7 60 65.0
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 9.7e-15 84.3 85 50.6
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 1.3e-14 84.0 59 67.8
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 1.3e-14 84.0 58 62.1
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.7e-14 83.6 67 58.2
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.7e-14 83.6 62 61.3
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 1.7e-14 83.6 58 60.3
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 1.7e-14 83.6 58 60.3
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 2.2e-14 83.2 67 56.7
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.2e-14 83.2 67 56.7
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.2e-14 83.2 67 56.7
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 2.2e-14 83.2 58 60.3
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 2.8e-14 82.8 59 64.4
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 3.7e-14 82.4 74 55.4
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 3.7e-14 82.4 58 63.8
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 4.8e-14 82.0 59 66.1
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 4.8e-14 82.0 58 62.1
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 4.8e-14 82.0 59 62.7
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 4.8e-14 82.0 58 60.3
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 6.3e-14 81.6 58 62.1
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 6.3e-14 81.6 58 67.2
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 6.3e-14 81.6 59 61.0
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 6.3e-14 81.6 59 61.0
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 8.2e-14 81.3 58 62.1
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 8.2e-14 81.3 59 62.7
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 8.2e-14 81.3 59 64.4
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 1.1e-13 80.9 73 53.4
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 1.1e-13 80.9 73 53.4
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 1.1e-13 80.9 58 58.6
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 1.1e-13 80.9 59 62.7
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 1.8e-13 80.1 59 61.0
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.8e-13 80.1 58 65.5
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 1.8e-13 80.1 60 58.3
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 1.8e-13 80.1 60 58.3
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 2.4e-13 79.7 59 61.0
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.4e-13 79.7 59 62.7
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 2.4e-13 79.7 60 56.7
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 2.4e-13 79.7 58 62.1
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 2.4e-13 79.7 58 62.1
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 3.1e-13 79.3 59 61.0
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 4.1e-13 79.0 58 56.9
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 4.1e-13 79.0 58 60.3
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 5.3e-13 78.6 58 62.1
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 6.9e-13 78.2 58 63.8
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 6.9e-13 78.2 58 60.3
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 9.1e-13 77.8 74 51.4
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 9.1e-13 77.8 59 59.3
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 9.1e-13 77.8 58 55.2
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.2e-12 77.4 59 55.9
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 1.2e-12 77.4 60 56.7
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 1.2e-12 77.4 58 53.4
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.2e-12 77.4 74 51.4
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 1.5e-12 77.0 58 55.2
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 2.0e-12 76.6 58 56.9
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.6e-12 76.3 57 57.9
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 2.6e-12 76.3 74 51.4
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 2.6e-12 76.3 58 53.4
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 3.4e-12 75.9 58 56.9
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 3.4e-12 75.9 58 56.9
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 4.5e-12 75.5 58 58.6
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 4.5e-12 75.5 59 59.3
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 5.9e-12 75.1 58 55.2
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 7.7e-12 74.7 58 58.6
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 1.3e-11 73.9 58 58.6
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 3.8e-11 72.4 58 51.7
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 6.5e-11 71.6 67 52.2
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 6.5e-11 71.6 59 57.6
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 8.5e-11 71.2 58 56.9
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 8.5e-11 71.2 58 56.9
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 8.5e-11 71.2 58 56.9
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 1.9e-10 70.1 58 58.6
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 3.2e-10 69.3 79 46.8
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 7.2e-10 68.2 58 56.9
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 9.4e-10 67.8 58 62.1
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 1.2e-09 67.4 58 55.2
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.1e-09 66.6 59 50.8
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 3.6e-09 65.9 56 51.8
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 6.1e-09 65.1 62 48.4
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 1.4e-08 63.9 59 50.8
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-08 63.9 56 60.7
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-08 63.9 56 60.7
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 2.3e-08 63.2 55 54.5
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 3.9e-08 62.4 74 43.2
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 6.7e-08 61.6 74 45.9
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 7.4e-07 58.2 60 45.0
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 4.8e-06 55.5 61 47.5


User provided reference genes

Program Settings