Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p24030 Brassica napus HOM05D003115 ORTHO05D019968 5.1e-108 394.4 202 100.0
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 1.9e-38 163.3 320 37.2
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.8e-37 159.5 317 38.8
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 8.4e-34 147.9 163 54.6
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 2.4e-33 146.4 316 35.1
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 1.0e-31 141.0 157 50.3
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 1.0e-31 141.0 156 50.6
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 6.6e-31 138.3 316 33.9
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 1.5e-30 137.1 156 48.7
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 3.3e-30 136.0 160 52.5
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 5.6e-30 135.2 312 34.0
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 1.2e-27 127.5 163 47.2
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 2.0e-27 126.7 317 33.1
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 5.8e-27 125.2 156 48.1
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 2.4e-25 119.8 317 32.5
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 3.2e-25 119.4 317 32.5
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 9.3e-25 117.9 317 32.2
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 1.3e-18 97.4 317 29.3
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 2.2e-18 96.7 185 37.3
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 4.9e-18 95.5 156 39.1
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 8.4e-18 94.7 163 38.0
BolC5t31124H Brassica oleracea HOM05D003115 ORTHO05D019968 1.2e-16 90.9 67 77.6
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 2.1e-16 90.1 156 37.2
A09p40410 Brassica napus HOM05D003115 ORTHO05D019968 1.8e-15 87.0 67 73.1
BraA09t39537Z Brassica rapa HOM05D003115 ORTHO05D019968 1.8e-15 87.0 67 73.1
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.3e-15 86.7 159 37.1
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.3e-15 86.7 159 37.1
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 3.9e-15 85.9 252 30.2
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 1.1e-14 84.3 159 38.4
AL3G41550 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.5e-14 84.0 184 37.5
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 1.5e-14 84.0 159 35.8
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.5e-14 84.0 156 37.8
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 1.9e-14 83.6 319 25.7
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 1.9e-14 83.6 161 34.8
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 3.3e-14 82.8 159 36.5
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 4.3e-14 82.4 160 32.5
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 5.7e-14 82.0 159 37.1
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 5.7e-14 82.0 158 34.8
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 7.4e-14 81.6 159 32.7
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 7.4e-14 81.6 159 32.7
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.3e-13 80.9 196 32.1
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 1.3e-13 80.9 165 37.0
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 1.6e-13 80.5 159 36.5
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.1e-13 80.1 319 25.7
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 2.1e-13 80.1 159 34.6
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 2.1e-13 80.1 159 33.3
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 6.2e-13 78.6 159 34.6
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 8.2e-13 78.2 159 33.3
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 1.1e-12 77.8 302 25.8
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 1.1e-12 77.8 159 33.3
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.8e-12 77.0 276 26.1
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 2.4e-12 76.6 152 34.9
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 2.4e-12 76.6 159 37.7
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 3.1e-12 76.3 159 34.6
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 5.3e-12 75.5 175 29.7
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 5.3e-12 75.5 161 36.0
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 6.9e-12 75.1 167 35.9
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 3.4e-11 72.8 171 33.9
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 5.8e-11 72.0 193 30.6
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 7.6e-11 71.6 159 32.7
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 2.9e-10 69.7 193 29.5
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 2.9e-10 69.7 159 32.1
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 5.0e-10 68.9 163 31.3
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 5.0e-10 68.9 193 30.1
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 6.5e-10 68.6 116 31.9
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 6.5e-10 68.6 155 32.3
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 6.5e-10 68.6 193 29.5
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 6.5e-10 68.6 158 29.7
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.1e-09 67.8 159 34.6
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 1.9e-09 67.0 193 28.0
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 3.2e-09 66.2 156 32.1
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 4.2e-09 65.9 156 32.1
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 5.5e-09 65.5 156 29.5
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 5.5e-09 65.5 154 33.1
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 7.1e-09 65.1 163 33.7
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 7.1e-09 65.1 159 28.3
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 9.3e-09 64.7 98 37.8
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 2.1e-08 63.5 159 31.4
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 2.1e-08 63.5 161 29.8
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.1e-08 63.5 161 29.8
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.1e-08 63.5 161 29.8
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.1e-08 63.5 161 29.8
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 2.7e-08 63.2 173 28.3
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 3.5e-08 62.8 300 25.3
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 3.5e-08 62.8 161 29.8
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 4.6e-08 62.4 156 32.1
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 4.6e-08 62.4 161 29.2
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 1.0e-07 61.2 193 26.9
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 3.0e-07 59.7 166 29.5
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 3.9e-07 59.3 159 25.8
BcaC05g26361 Brassica carinata HOM05D031756 ORTHO05D019968 1.1e-06 57.8 129 39.5
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 2.5e-06 56.6 240 25.0
C05p24000 Brassica napus HOM05D031756 ORTHO05D019968 3.3e-06 56.2 69 52.2
BolC5t31130H Brassica oleracea HOM05D031756 ORTHO05D019968 5.7e-06 55.5 129 38.8
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 5.7e-06 55.5 161 28.6
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 7.4e-06 55.1 125 38.4


User provided reference genes

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