Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 1.1e-26 122.5 60 100.0
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-26 122.5 60 100.0
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-25 119.0 60 96.7
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-20 102.1 50 100.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-19 99.4 50 98.0
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 2.5e-18 94.7 52 90.4
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 4.7e-17 90.5 50 90.0
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 8.9e-16 86.3 50 88.0
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 4.4e-15 84.0 51 88.2
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 4.4e-15 84.0 51 88.2
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 4.4e-15 84.0 51 88.2
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 4.4e-15 84.0 51 88.2
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 4.4e-15 84.0 51 88.2
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 4.4e-15 84.0 51 88.2
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 5.8e-15 83.6 50 86.0
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 7.5e-15 83.2 47 87.2
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-14 82.4 51 86.3
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.3e-14 82.4 51 86.3
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.7e-14 82.0 51 84.3
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.7e-14 82.0 50 82.0
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 2.9e-14 81.3 47 87.2
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-13 79.3 51 82.4
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.1e-13 77.4 51 80.4
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 4.1e-13 77.4 44 88.6
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 7.1e-13 76.6 50 76.0
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-12 75.5 50 76.0
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.5e-12 74.3 50 74.0
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 7.8e-12 73.2 50 74.0
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.5e-10 68.9 46 73.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 9.5e-10 66.2 46 71.7
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-08 62.4 47 70.2
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.4e-08 62.4 47 66.0
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.8e-08 62.0 49 61.2
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.8e-08 62.0 47 68.1
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.9e-08 59.7 54 59.3
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 8.9e-08 59.7 50 64.0
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-07 59.3 47 63.8
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-07 59.3 47 63.8
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.2e-07 59.3 51 54.9
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.2e-07 59.3 51 49.0
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.2e-07 59.3 50 52.0
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.5e-07 58.9 47 63.8
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.5e-07 58.9 51 52.9
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.5e-07 58.9 46 58.7
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.6e-07 58.2 51 56.9
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 2.6e-07 58.2 54 51.9
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 4.4e-07 57.4 46 56.5
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.8e-07 57.0 46 56.5
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.8e-07 57.0 47 63.8
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 5.8e-07 57.0 50 54.0
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 7.6e-07 56.6 46 56.5
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 9.9e-07 56.2 50 50.0
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 9.9e-07 56.2 51 49.0
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 9.9e-07 56.2 46 54.3
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.3e-06 55.8 50 50.0
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.3e-06 55.8 50 50.0
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.3e-06 55.8 50 50.0
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.3e-06 55.8 50 50.0
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-06 55.5 52 59.6
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.9e-06 54.7 47 59.6
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.9e-06 54.7 52 50.0
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.7e-06 54.3 45 55.6
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.7e-06 54.3 50 48.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 3.7e-06 54.3 46 52.2
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 3.7e-06 54.3 54 46.3
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 4.9e-06 53.9 46 52.2
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 6.4e-06 53.5 46 56.5
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 6.4e-06 53.5 45 53.3
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 6.4e-06 53.5 45 51.1
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 8.4e-06 53.1 46 52.2
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 8.4e-06 53.1 53 50.9


User provided reference genes

Program Settings