Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 5.6e-176 622.1 746 100.0
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 5.4e-171 605.5 574 98.3
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 3.5e-170 602.8 573 98.6
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 3.0e-137 493.4 746 88.6
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 8.2e-127 458.8 580 77.6
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 2.2e-119 434.1 431 81.2
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 1.7e-116 424.5 582 80.1
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 5.7e-112 409.5 586 83.6
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 1.5e-107 394.8 586 75.6
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 3.6e-66 257.3 582 68.2
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 8.1e-66 256.1 585 70.3
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 2.6e-64 251.1 582 71.0
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 2.2e-63 248.1 585 71.1
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 5.6e-51 206.8 218 55.0
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 2.4e-49 201.4 573 47.6
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 2.4e-46 191.4 223 45.3
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 5.4e-46 190.3 271 40.2
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 1.0e-44 186.0 206 47.1
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 3.0e-44 184.5 276 41.3
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 3.9e-44 184.1 205 48.8
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 3.9e-44 184.1 231 47.6
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 8.7e-44 183.0 206 47.6
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 1.9e-43 181.8 268 41.8
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 4.8e-42 177.2 241 45.2
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 9.0e-41 172.9 272 37.1
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 1.9e-38 165.2 189 45.5
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 5.5e-38 163.7 186 45.7
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 7.1e-38 163.3 208 43.3
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 1.2e-37 162.5 168 51.8
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 1.3e-36 159.1 177 46.9
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 2.3e-36 158.3 184 45.7
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 5.1e-36 157.1 191 42.9
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 6.7e-36 156.8 212 42.0
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 6.7e-36 156.8 171 50.3
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 8.7e-36 156.4 184 43.5
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 1.5e-35 155.6 188 44.7
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 1.5e-35 155.6 190 40.0
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 1.9e-35 155.2 190 40.0
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 1.9e-35 155.2 190 44.2
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 3.3e-35 154.5 180 42.8
C05p22100 Brassica napus HOM05D007426 ORTHO05D009167 4.3e-35 154.1 194 99.0
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 5.6e-35 153.7 193 45.6
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 7.4e-35 153.3 181 44.2
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 9.6e-35 152.9 215 40.5
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 1.3e-34 152.5 190 39.5
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 1.6e-34 152.1 190 43.2
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 2.1e-34 151.8 190 42.6
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 2.8e-34 151.4 177 45.8
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 1.4e-33 149.1 175 45.1
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 4.0e-33 147.5 177 45.8
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 4.0e-33 147.5 215 41.4
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 6.9e-33 146.7 202 42.6
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 3.4e-32 144.4 224 38.4
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 3.4e-32 144.4 188 42.6
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 4.5e-32 144.1 181 41.4
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 5.8e-32 143.7 174 46.0
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 5.8e-32 143.7 224 38.4
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 5.8e-32 143.7 188 41.0
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 1.7e-31 142.1 189 42.3
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 4.9e-31 140.6 178 40.4
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 6.5e-31 140.2 167 46.1
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 6.5e-31 140.2 215 38.6
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 3.2e-30 137.9 179 41.3
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 9.3e-30 136.3 181 43.6
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 1.2e-29 136.0 183 38.3
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 3.5e-29 134.4 170 44.7
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 4.6e-29 134.0 188 39.4
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 6.0e-29 133.7 158 45.6
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 1.8e-28 132.1 201 36.8
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 8.7e-28 129.8 215 33.5
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 5.7e-27 127.1 173 41.0
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 9.7e-27 126.3 226 35.4
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 1.3e-26 125.9 145 46.2
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 2.1e-26 125.2 185 41.6
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 3.7e-26 124.4 147 41.5
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 6.3e-26 123.6 138 46.4
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 6.3e-26 123.6 159 39.0
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 2.4e-25 121.7 154 40.9
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 5.9e-24 117.1 167 40.1
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 2.9e-23 114.8 211 37.0
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 5.0e-23 114.0 128 45.3
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 6.1e-21 107.1 165 35.2
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 1.9e-19 102.1 148 40.5
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 7.4e-19 100.1 210 32.9
BcaC05g26202 Brassica carinata HOM05D007426 ORTHO05D009167 4.8e-18 97.4 45 97.8
BolC5t30906H Brassica oleracea HOM05D007426 ORTHO05D009167 4.8e-18 97.4 45 97.8
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 9.1e-17 93.2 100 48.0
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 2.2e-15 88.6 97 48.5
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 9.4e-14 83.2 140 32.9
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.6e-13 82.4 134 37.3
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 6.7e-12 77.0 149 33.6
Os12g0152600 Oryza sativa ssp. japonica HOM05D025020 ORTHO05D009167 4.4e-11 74.3 184 32.1
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 1.7e-10 72.4 106 37.7
Oeu048390.1 Olea europaea HOM05D000798 ORTHO05D000659 3.7e-10 71.2 199 25.6
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 4.8e-10 70.9 74 48.6
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 4.8e-10 70.9 188 26.6
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 4.8e-10 70.9 190 31.1
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 1.1e-09 69.7 227 27.3
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 3.1e-09 68.2 195 25.6
A09p41780 Brassica napus HOM05D007426 ORTHO05D009167 4.1e-09 67.8 41 85.4
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 4.1e-09 67.8 228 25.4
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 6.9e-09 67.0 173 28.3
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 9.1e-09 66.6 228 25.0
Zm00001eb164150 Zea mays HOM05D025020 ORTHO05D009167 9.1e-09 66.6 189 31.2
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 2.0e-08 65.5 216 25.9
MD10G1084800 Malus domestica HOM05D007675 ORTHO05D009699 2.0e-08 65.5 245 24.9
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 2.0e-08 65.5 225 27.1
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 2.0e-08 65.5 147 28.6
Zm00001eb118640 Zea mays HOM05D025020 ORTHO05D009167 2.6e-08 65.1 185 31.4
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 3.4e-08 64.7 171 28.7
BcaC05g24842 Brassica carinata HOM05D006888 ORTHO05D008371 4.5e-08 64.3 223 24.2
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 4.5e-08 64.3 216 25.5
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 4.5e-08 64.3 216 25.5
Prupe.8G107700 Prunus persica HOM05D007675 ORTHO05D009699 7.7e-08 63.5 249 22.9
Peaxi162Scf00205g01111 Petunia axillaris HOM05D007426 ORTHO05D009167 1.0e-07 63.2 61 49.2
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 1.3e-07 62.8 228 24.6
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 1.3e-07 62.8 166 24.7
Cpa.g.sc62.93 Carica papaya HOM05D007675 ORTHO05D009699 2.2e-07 62.0 246 25.2
Sp1g08450 Schrenkiella parvula HOM05D006888 ORTHO05D008371 2.2e-07 62.0 224 23.7
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 2.9e-07 61.6 215 23.7
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 2.9e-07 61.6 215 24.2
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.9e-07 61.6 177 28.2
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 2.9e-07 61.6 174 29.3
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 6.5e-07 60.5 194 25.8
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 8.5e-07 60.1 235 23.4
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 8.5e-07 60.1 196 22.4
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 8.5e-07 60.1 179 27.4
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 1.1e-06 59.7 187 25.1
Zm00001eb197020 Zea mays HOM05D025020 ORTHO05D009167 1.1e-06 59.7 186 28.0
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 1.4e-06 59.3 212 23.6
CDE04G3788 Ceratophyllum demersum HOM05D007639 ORTHO05D009509 1.4e-06 59.3 96 34.4
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 1.9e-06 58.9 168 26.8
Lj5P203T17 Lonicera japonica HOM05D007675 ORTHO05D009699 1.9e-06 58.9 237 23.6
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 2.5e-06 58.5 165 25.5
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 2.5e-06 58.5 174 23.0
ATR1076G001 Amborella trichopoda HOM05D007426 ORTHO05D009167 3.2e-06 58.2 59 47.5
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 3.2e-06 58.2 212 25.5
EL10Ac4g09424 Beta vulgaris HOM05D006888 ORTHO05D008371 4.2e-06 57.8 190 22.6
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 4.2e-06 57.8 182 28.0
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 5.5e-06 57.4 184 27.2
AT1G09820 Arabidopsis thaliana HOM05D006888 ORTHO05D008371 7.2e-06 57.0 243 24.7
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 7.2e-06 57.0 187 26.2
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 9.4e-06 56.6 175 21.7
HanXRQChr09g0260571 Helianthus annuus HOM05D007426 ORTHO05D009167 9.4e-06 56.6 93 30.1


User provided reference genes

Program Settings