Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 4.3e-68 261.2 127 100.0
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 4.3e-68 261.2 127 100.0
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 5.8e-65 250.8 127 97.6
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 2.4e-63 245.4 128 93.8
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 2.4e-63 245.4 128 93.8
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 4.1e-63 244.6 127 92.9
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 9.2e-63 243.4 127 92.1
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 9.2e-63 243.4 127 92.1
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 2.1e-62 242.3 126 92.9
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.7e-62 241.9 127 92.1
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 3.5e-62 241.5 129 93.0
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 4.6e-62 241.1 125 92.0
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 7.3e-60 233.8 127 89.0
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 2.8e-59 231.9 127 87.4
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 4.7e-59 231.1 127 87.4
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 5.2e-58 227.6 127 85.8
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 4.4e-57 224.6 127 82.7
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.3e-56 223.0 127 83.5
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.4e-55 218.8 127 81.1
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.1e-54 215.7 127 81.9
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 4.6e-54 214.5 127 79.5
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 6.0e-54 214.2 114 90.4
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 3.0e-53 211.8 127 76.4
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 1.5e-52 209.5 127 77.2
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 1.5e-52 209.5 127 75.6
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.9e-52 209.1 127 77.2
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 7.3e-52 207.2 127 77.2
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 2.8e-51 205.3 127 74.8
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 3.6e-51 204.9 127 74.0
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 6.2e-51 204.1 127 75.6
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 8.1e-51 203.8 127 75.6
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 8.1e-51 203.8 127 77.2
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.4e-50 203.0 127 74.8
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 2.4e-50 202.2 127 72.4
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 3.1e-50 201.8 127 74.8
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 4.0e-50 201.4 127 78.0
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 6.9e-50 200.7 127 74.0
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 1.2e-49 199.9 127 71.7
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.2e-49 199.9 127 74.0
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.2e-49 199.9 127 75.6
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.2e-49 199.9 127 74.0
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.5e-49 199.5 127 74.0
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.0e-49 199.1 127 74.0
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.0e-49 199.1 127 74.0
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 2.0e-49 199.1 127 77.2
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 2.0e-49 199.1 126 73.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 2.0e-49 199.1 127 72.4
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 7.6e-49 197.2 127 72.4
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 7.6e-49 197.2 127 71.7
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 9.9e-49 196.8 127 70.9
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 9.9e-49 196.8 127 73.2
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.3e-48 196.4 125 75.2
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.3e-48 196.4 125 75.2
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 1.3e-48 196.4 127 70.9
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.7e-48 196.1 127 72.4
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 2.2e-48 195.7 127 74.0
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 2.2e-48 195.7 125 73.6
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.2e-48 195.7 127 71.7
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.9e-48 195.3 127 74.0
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 2.9e-48 195.3 127 74.0
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.9e-48 195.3 127 71.7
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 3.8e-48 194.9 127 70.1
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 3.8e-48 194.9 127 73.2
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 3.8e-48 194.9 127 74.0
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 4.9e-48 194.5 127 74.0
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 4.9e-48 194.5 127 72.4
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 4.9e-48 194.5 127 74.0
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.4e-48 194.1 126 70.6
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 6.4e-48 194.1 128 72.7
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 6.4e-48 194.1 127 72.4
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 8.4e-48 193.7 127 70.9
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 8.4e-48 193.7 127 74.0
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 1.1e-47 193.4 127 73.2
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.1e-47 193.4 127 72.4
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.4e-47 193.0 127 73.2
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.9e-47 192.6 126 72.2
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 1.9e-47 192.6 127 71.7
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 2.4e-47 192.2 127 70.9
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 2.4e-47 192.2 127 72.4
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.4e-47 192.2 127 72.4
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 2.4e-47 192.2 127 70.1
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 3.2e-47 191.8 127 70.1
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 5.4e-47 191.0 127 72.4
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 5.4e-47 191.0 127 71.7
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 7.1e-47 190.7 127 69.3
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 7.1e-47 190.7 127 72.4
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 9.3e-47 190.3 127 72.4
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.2e-46 189.9 125 72.8
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 2.1e-46 189.1 127 71.7
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.1e-46 189.1 127 71.7
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 2.7e-46 188.7 125 72.0
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 2.7e-46 188.7 127 70.1
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 2.7e-46 188.7 127 69.3
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 2.7e-46 188.7 127 70.1
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 3.5e-46 188.3 127 70.9
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.5e-46 188.3 127 71.7
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 4.6e-46 188.0 127 70.1
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 4.6e-46 188.0 125 71.2
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 6.0e-46 187.6 127 69.3
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 6.0e-46 187.6 127 69.3
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 7.8e-46 187.2 127 69.3
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.0e-45 186.8 127 70.1
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 1.3e-45 186.4 127 70.9
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.7e-45 186.0 127 70.9
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 1.7e-45 186.0 127 70.9
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.7e-45 186.0 127 70.9
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.7e-45 186.0 127 69.3
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.3e-45 185.7 127 68.5
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 2.3e-45 185.7 127 69.3
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 2.3e-45 185.7 127 72.4
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 3.0e-45 185.3 127 68.5
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.9e-45 184.9 127 70.9
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 3.9e-45 184.9 127 72.4
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 3.9e-45 184.9 127 70.1
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 5.1e-45 184.5 127 67.7
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 6.6e-45 184.1 125 68.8
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 1.1e-44 183.3 120 71.7
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.1e-44 183.3 127 67.7
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.1e-44 183.3 127 69.3
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.1e-44 183.3 125 67.2
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.9e-44 182.6 120 72.5
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 2.5e-44 182.2 127 66.9
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.5e-44 182.2 127 66.9
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 2.5e-44 182.2 127 66.9
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.3e-44 181.8 127 66.9
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 5.6e-44 181.0 127 65.4
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 5.6e-44 181.0 127 67.7
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 5.6e-44 181.0 127 66.1
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 7.3e-44 180.6 127 66.1
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 9.6e-44 180.3 120 73.3
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 1.3e-43 179.9 127 68.5
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 2.1e-43 179.1 127 66.9
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 2.1e-43 179.1 127 65.4
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 1.8e-42 176.0 127 65.4
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.8e-42 176.0 127 64.6
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 3.1e-42 175.3 127 65.4
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 9.0e-42 173.7 126 64.3
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 2.0e-41 172.6 120 67.5
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.5e-41 171.4 127 63.8
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.3e-40 169.9 127 64.6
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.9e-39 166.0 120 66.7
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 5.4e-39 164.5 125 64.0
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 7.1e-39 164.1 127 60.6
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 2.3e-37 159.1 126 60.3
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 3.9e-37 158.3 125 62.4
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 6.7e-37 157.5 118 66.1
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 1.1e-36 156.8 122 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 1.5e-36 156.4 127 60.6
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.9e-36 156.0 113 65.5
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 2.5e-36 155.6 125 59.2
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.5e-36 155.6 120 62.5
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 3.3e-36 155.2 119 60.5
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 2.8e-35 152.1 127 59.8
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 4.0e-34 148.3 132 53.8
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 7.6e-33 144.1 131 54.2
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 1.9e-31 139.4 126 54.0
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.1e-28 130.2 91 69.2
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 3.3e-28 128.6 134 47.8
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 1.5e-25 119.8 126 51.6
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 3.8e-24 115.2 110 50.9
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 5.5e-23 111.3 119 49.6
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 3.5e-22 108.6 126 47.6
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.0e-21 107.1 110 52.7
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 9.0e-18 94.0 71 60.6
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 1.5e-17 93.2 71 59.2
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 3.6e-14 82.0 59 59.3
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.7e-12 73.9 61 55.7
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 2.6e-09 65.9 40 67.5


User provided reference genes

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