Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 9.1e-47 189.9 95 100.0
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 9.1e-47 189.9 95 100.0
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 9.1e-47 189.9 95 100.0
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 9.1e-47 189.9 95 100.0
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 2.0e-46 188.7 95 98.9
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 7.7e-46 186.8 95 97.9
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 9.4e-44 179.9 96 95.8
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 1.7e-40 169.1 95 91.6
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 1.7e-40 169.1 95 91.6
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 1.7e-40 169.1 95 91.6
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 2.2e-40 168.7 101 86.1
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 2.8e-40 168.3 101 87.1
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 6.3e-40 167.2 87 93.1
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 8.2e-40 166.8 97 87.6
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 9.1e-39 163.3 94 86.2
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 9.1e-39 163.3 94 86.2
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 1.5e-38 162.5 94 85.1
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 2.9e-37 158.3 84 92.9
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 2.9e-37 158.3 84 92.9
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 8.5e-37 156.8 99 81.8
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 9.4e-36 153.3 94 81.9
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 3.9e-34 147.9 79 92.4
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 1.3e-32 142.9 93 81.7
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 8.2e-32 140.2 94 77.7
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 5.3e-31 137.5 90 75.6
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 9.1e-31 136.7 66 100.0
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 9.1e-31 136.7 95 71.6
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 1.6e-30 136.0 96 70.8
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 1.6e-30 136.0 82 78.0
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 2.0e-30 135.6 83 80.7
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 4.5e-30 134.4 94 73.4
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 7.7e-30 133.7 95 70.5
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 1.0e-29 133.3 93 71.0
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 1.3e-29 132.9 90 72.2
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 1.7e-29 132.5 82 76.8
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 2.2e-29 132.1 87 73.6
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 2.2e-29 132.1 79 79.7
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 2.2e-29 132.1 95 71.6
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 2.9e-29 131.7 77 81.8
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 2.9e-29 131.7 91 70.3
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 3.8e-29 131.3 82 78.0
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 5.0e-29 131.0 95 69.5
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 6.5e-29 130.6 85 77.6
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 6.5e-29 130.6 85 77.6
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 6.5e-29 130.6 95 72.6
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 6.5e-29 130.6 88 73.9
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 8.5e-29 130.2 85 74.1
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 8.5e-29 130.2 82 74.4
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 8.5e-29 130.2 85 77.6
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 1.1e-28 129.8 82 72.0
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 1.1e-28 129.8 91 69.2
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.1e-28 129.8 73 83.6
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 1.5e-28 129.4 82 75.6
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 1.5e-28 129.4 86 73.3
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 1.9e-28 129.0 95 68.4
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 1.9e-28 129.0 85 75.3
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 2.5e-28 128.6 87 69.0
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 2.5e-28 128.6 76 75.0
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 2.5e-28 128.6 82 74.4
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 3.2e-28 128.3 89 70.8
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 3.2e-28 128.3 92 69.6
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 3.2e-28 128.3 91 72.5
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 3.2e-28 128.3 90 67.8
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 4.2e-28 127.9 90 70.0
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 4.2e-28 127.9 90 70.0
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 4.2e-28 127.9 82 75.6
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 4.2e-28 127.9 95 69.5
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 4.2e-28 127.9 82 74.4
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 4.2e-28 127.9 83 73.5
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 5.5e-28 127.5 96 71.9
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 5.5e-28 127.5 95 71.6
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 5.5e-28 127.5 88 72.7
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 7.2e-28 127.1 82 76.8
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 7.2e-28 127.1 85 76.5
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 9.4e-28 126.7 82 74.4
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 9.4e-28 126.7 82 74.4
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 1.2e-27 126.3 87 73.6
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 1.2e-27 126.3 85 74.1
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 1.2e-27 126.3 90 66.7
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 1.2e-27 126.3 90 71.1
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 1.2e-27 126.3 83 74.7
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 2.1e-27 125.6 82 76.8
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 2.7e-27 125.2 90 68.9
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 6.1e-27 124.0 95 67.4
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 6.1e-27 124.0 85 71.8
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 6.1e-27 124.0 94 70.2
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 6.1e-27 124.0 94 70.2
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 6.1e-27 124.0 94 70.2
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 6.1e-27 124.0 88 69.3
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 8.0e-27 123.6 74 75.7
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.0e-26 123.2 91 69.2
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.0e-26 123.2 89 71.9
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 1.0e-26 123.2 85 71.8
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.4e-26 122.9 80 76.2
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 1.4e-26 122.9 80 68.8
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 1.4e-26 122.9 85 71.8
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 1.8e-26 122.5 93 71.0
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 1.8e-26 122.5 84 71.4
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 2.3e-26 122.1 89 68.5
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 1.2e-25 119.8 95 65.3
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 3.3e-25 118.2 85 71.8
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 7.5e-25 117.1 110 58.2
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 1.7e-24 115.9 104 60.6
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 1.7e-24 115.9 84 67.9
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 2.2e-24 115.5 93 64.5
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 6.3e-24 114.0 103 59.2
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 2.4e-23 112.1 78 71.8
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 1.2e-22 109.8 79 70.9
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 1.6e-22 109.4 80 70.0
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 2.7e-22 108.6 75 73.3
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 4.5e-22 107.8 81 69.1
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 4.5e-22 107.8 81 67.9
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 5.9e-22 107.5 78 71.8
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 5.9e-22 107.5 73 69.9
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 5.9e-22 107.5 71 71.8
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 5.9e-22 107.5 66 80.3
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 6.5e-21 104.0 65 73.8
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 6.5e-21 104.0 78 67.9
SHI08265 Sapria himalayana HOM05D005828 ORTHO05D006822 1.0e-18 96.7 68 66.2
Zm00001eb102630 Zea mays HOM05D005828 ORTHO05D006822 3.7e-16 88.2 80 57.5
SEGI_28823 Sequoiadendron giganteum HOM05D005828 ORTHO05D006822 1.6e-14 82.8 59 69.5
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 2.7e-14 82.0 91 54.9
Pp3c4_22520 Physcomitrium patens HOM05D005828 ORTHO05D006822 3.5e-14 81.6 91 48.4
BcaB01g03422 Brassica carinata HOM05D037851 ORTHO05D006822 5.0e-13 77.8 100 53.0
BcaB02g06981 Brassica carinata HOM05D037851 ORTHO05D006822 5.0e-13 77.8 100 53.0
BcaB02g06986 Brassica carinata HOM05D037851 ORTHO05D006822 5.0e-13 77.8 100 53.0
Mapoly0038s0094 Marchantia polymorpha HOM05D005828 ORTHO05D006822 5.0e-13 77.8 62 54.8
Lalb_Chr17g0343871 Lupinus albus HOM05D005828 ORTHO05D006822 6.5e-13 77.4 47 76.6
BcaB03g11887 Brassica carinata HOM05D005828 ORTHO05D006822 5.5e-12 74.3 48 77.1
BcaNung06341 Brassica carinata HOM05D005828 ORTHO05D006822 5.5e-12 74.3 48 77.1
BcaNung06770 Brassica carinata HOM05D005828 ORTHO05D006822 5.5e-12 74.3 48 77.1
AagrBONN_evm.TU.Sc2ySwM_368.871 Anthoceros agrestis HOM05D005828 ORTHO05D006822 2.1e-11 72.4 63 58.7
SMO232G0111 Selaginella moellendorffii HOM05D005828 ORTHO05D006822 8.0e-11 70.5 71 50.7
MD03G1196900 Malus domestica HOM05D005828 ORTHO05D006822 4.4e-09 64.7 55 56.4


User provided reference genes

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