Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 3.6e-109 398.3 205 100.0
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 3.6e-109 398.3 205 100.0
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 3.6e-109 398.3 205 100.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.1e-108 396.7 205 99.5
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-106 389.8 205 98.0
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 1.7e-106 389.4 205 97.6
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-93 346.7 205 87.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.2e-93 346.7 205 87.3
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 4.0e-92 341.7 205 86.3
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 4.0e-92 341.7 205 86.3
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 4.0e-92 341.7 205 86.3
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 6.9e-92 340.9 206 87.4
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.6e-91 339.0 203 89.2
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 6.4e-90 334.3 210 86.7
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 5.4e-89 331.3 207 86.5
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 7.1e-89 330.9 208 86.1
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 6.6e-87 324.3 210 83.8
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 8.7e-87 323.9 188 86.7
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 6.2e-85 317.8 209 85.2
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 6.2e-85 317.8 209 85.2
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.4e-84 316.6 211 82.9
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 3.1e-84 315.5 209 83.7
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 3.1e-84 315.5 209 83.7
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 3.1e-84 315.5 209 83.7
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-82 308.9 205 83.4
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.6e-48 196.8 212 56.1
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.1e-44 184.1 217 53.9
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.2e-40 170.6 212 50.5
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.4e-39 167.2 204 49.5
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 3.0e-39 166.0 212 49.1
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 3.0e-39 166.0 214 50.9
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 5.2e-39 165.2 208 49.0
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 5.2e-39 165.2 210 50.0
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 3.3e-38 162.5 223 48.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-37 160.6 206 49.5
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.3e-37 160.6 206 49.5
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.8e-37 158.7 202 47.0
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.1e-36 157.5 218 48.2
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.1e-36 157.5 214 45.8
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.4e-36 156.4 212 45.8
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.3e-36 155.2 206 48.1
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 9.1e-36 154.5 230 41.3
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.2e-35 154.1 191 50.3
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.0e-35 153.3 172 57.0
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 5.9e-35 151.8 175 52.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.0e-34 151.0 208 47.1
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.0e-34 151.0 216 48.1
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.0e-34 151.0 212 43.4
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.3e-34 150.6 233 43.3
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.2e-34 149.8 213 42.7
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.0e-34 148.7 228 45.6
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 5.0e-34 148.7 201 46.3
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 5.0e-34 148.7 195 47.7
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.5e-33 146.4 220 44.5
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.2e-33 146.0 218 44.0
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 3.2e-33 146.0 219 43.4
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 4.2e-33 145.6 199 46.2
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.5e-33 145.2 199 45.7
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.2e-33 144.8 199 45.7
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 7.2e-33 144.8 209 44.5
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 7.2e-33 144.8 205 44.4
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 9.4e-33 144.4 211 45.0
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 9.4e-33 144.4 204 45.6
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.6e-32 143.7 215 44.7
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 2.1e-32 143.3 206 45.6
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 2.1e-32 143.3 206 45.1
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 2.1e-32 143.3 205 43.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 2.7e-32 142.9 202 46.5
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.7e-32 142.9 217 42.9
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.7e-32 142.9 212 46.2
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.6e-32 142.5 216 43.5
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.6e-32 142.5 216 43.5
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.7e-32 142.1 209 43.5
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.7e-32 142.1 209 44.0
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 6.1e-32 141.7 198 45.5
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 8.0e-32 141.4 200 47.5
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.0e-32 141.4 224 43.3
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 8.0e-32 141.4 212 45.3
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.8e-31 140.2 199 44.7
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.0e-31 139.0 219 42.9
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 4.0e-31 139.0 197 48.7
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.5e-30 137.1 224 43.3
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.0e-30 136.7 191 44.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 2.0e-30 136.7 215 43.3
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.4e-30 135.6 208 43.3
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 9.7e-30 134.4 219 44.7
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.2e-29 133.3 219 43.4
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 2.2e-29 133.3 224 42.0
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 4.8e-29 132.1 227 43.2
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 6.3e-29 131.7 204 44.1
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 6.3e-29 131.7 207 41.1
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.4e-28 130.6 212 43.9
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.4e-28 129.8 184 44.0
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.4e-28 129.8 215 41.4
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.1e-28 129.4 223 42.6
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 4.1e-28 129.0 211 40.3
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 9.1e-28 127.9 204 40.7
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.6e-27 127.1 211 42.7
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.7e-27 126.3 214 41.1
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 3.5e-27 125.9 229 40.6
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 3.5e-27 125.9 210 43.8
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 7.7e-27 124.8 250 38.8
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.3e-26 124.0 176 44.3
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.3e-26 124.0 192 45.3
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.3e-26 124.0 211 42.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.7e-26 123.6 214 40.7
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.7e-26 123.6 225 38.7
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.2e-26 123.2 180 40.0
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.2e-26 123.2 185 42.2
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.9e-26 122.9 182 43.4
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.1e-25 120.9 222 39.2
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.1e-25 120.9 233 39.9
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.1e-25 120.9 209 39.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.9e-25 120.2 187 41.7
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 4.2e-25 119.0 225 39.1
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.2e-25 119.0 175 46.3
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 4.2e-25 119.0 216 38.4
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.5e-25 118.6 175 45.7
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.6e-24 117.1 195 39.0
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.6e-24 117.1 192 41.1
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 6.1e-24 115.2 160 43.1
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 8.0e-24 114.8 239 38.9
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.8e-23 113.6 209 40.2
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 4.0e-23 112.5 198 42.4
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 5.2e-23 112.1 224 38.8
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 8.8e-23 111.3 246 38.6
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.5e-22 110.5 215 37.2
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 2.0e-22 110.2 149 47.0
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 3.4e-22 109.4 200 39.0
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 9.8e-22 107.8 202 41.6
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.7e-21 107.1 251 34.3
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 6.3e-21 105.1 192 38.5
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.8e-20 103.6 177 40.1
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.0e-20 101.7 163 40.5
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.1e-20 101.3 163 40.5
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 9.1e-20 101.3 171 36.3
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.2e-19 100.9 178 35.4
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.6e-19 100.5 119 51.3
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.6e-19 100.5 158 44.9
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 2.7e-19 99.8 211 37.9
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 3.5e-19 99.4 197 37.1
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-18 97.1 205 37.1
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.7e-18 97.1 205 37.1
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 3.8e-18 95.9 258 32.2
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 3.8e-18 95.9 176 39.8
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 6.5e-18 95.1 183 35.5
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.9e-17 93.6 207 36.7
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-17 93.6 207 36.7
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 2.5e-17 93.2 207 36.2
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.2e-17 92.8 194 38.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.0e-16 88.2 111 49.5
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 8.0e-16 88.2 212 36.3
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 8.0e-16 88.2 202 32.7
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 2.0e-14 83.6 164 34.1
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.7e-14 82.0 190 35.3
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 5.7e-14 82.0 163 38.7
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.5e-14 81.6 201 34.3
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.2e-13 80.1 97 47.4
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 8.3e-13 78.2 187 33.7
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.1e-12 77.8 211 32.7
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 3.1e-12 76.3 193 33.2
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.9e-11 72.0 116 33.6
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.7e-10 70.5 177 33.3
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.9e-10 69.7 166 32.5
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 7.3e-09 65.1 243 28.4
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 2.1e-08 63.5 109 40.4
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.8e-08 63.2 194 28.9
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.3e-07 60.1 93 40.9
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.5e-06 57.4 76 44.7
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 3.4e-06 56.2 75 46.7


User provided reference genes

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