Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 4.2e-152 541.6 325 100.0
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 1.2e-151 540.0 325 99.4
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 1.2e-151 540.0 325 99.4
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 3.8e-137 491.9 326 90.5
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 5.0e-137 491.5 326 90.5
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 5.0e-129 464.9 338 85.8
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 1.1e-112 410.6 328 76.2
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 7.0e-107 391.3 328 73.2
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 1.7e-105 386.7 343 74.3
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 2.3e-97 359.8 329 69.0
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 3.0e-97 359.4 332 70.2
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 1.7e-89 333.6 333 64.0
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 1.3e-41 174.5 337 43.3
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 1.8e-22 110.9 348 33.0
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 4.7e-18 96.3 238 39.9
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 1.4e-17 94.7 234 34.2
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 1.4e-17 94.7 350 30.3
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 3.9e-17 93.2 338 34.0
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 5.2e-17 92.8 342 30.7
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 1.5e-16 91.3 345 32.5
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 1.5e-16 91.3 358 33.5
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 1.5e-16 91.3 358 33.5
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 2.0e-16 90.9 348 34.8
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 2.6e-16 90.5 337 35.0
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 4.4e-16 89.7 349 31.5
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 9.7e-16 88.6 353 32.0
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 1.3e-15 88.2 343 32.4
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.7e-15 87.8 342 32.7
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 3.7e-15 86.7 349 32.7
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 4.8e-15 86.3 341 30.5
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 6.3e-15 85.9 366 35.0
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 1.1e-14 85.1 230 33.5
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 1.4e-14 84.7 325 29.8
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 1.2e-13 81.6 345 31.6
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 1.6e-13 81.3 241 32.4
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 7.7e-13 79.0 347 32.0
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 1.0e-12 78.6 308 30.2
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.3e-12 78.2 305 31.8
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 1.3e-12 78.2 225 34.2
C07p01080 Brassica napus HOM05D012069 ORTHO05D040096 2.9e-12 77.0 139 41.0
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 2.9e-12 77.0 319 31.7
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 3.8e-12 76.6 239 32.6
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 5.0e-12 76.3 331 32.6
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 6.5e-12 75.9 303 34.0
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.5e-11 74.7 329 31.0
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 2.5e-11 73.9 224 34.4
BraA02t07661Z Brassica rapa HOM05D012069 ORTHO05D040096 4.2e-11 73.2 139 39.6
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 7.2e-11 72.4 385 30.6
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 7.2e-11 72.4 233 33.5
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 9.4e-11 72.0 350 32.3
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 2.7e-10 70.5 235 30.2
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 2.7e-10 70.5 229 32.8
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 4.7e-10 69.7 235 30.2
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 4.7e-10 69.7 306 33.7
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 6.1e-10 69.3 217 30.4
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 8.0e-10 68.9 346 32.4
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 1.4e-09 68.2 344 32.3
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 1.4e-09 68.2 299 31.8
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 1.4e-09 68.2 299 31.1
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 2.3e-09 67.4 222 32.0
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 3.0e-09 67.0 343 31.8
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 5.7e-08 62.8 342 30.7
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 7.5e-08 62.4 355 30.4
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 2.2e-07 60.8 339 26.8
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 2.8e-07 60.5 243 30.0
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 7.0e-06 55.8 351 25.6


User provided reference genes

Program Settings