Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p20320 Brassica napus HOM05D017144 ORTHO05D012335 1.1e-86 323.2 149 100.0
BolC5t30728H Brassica oleracea HOM05D017144 ORTHO05D012335 3.1e-86 321.6 149 99.3
BraA03t14884Z Brassica rapa HOM05D017144 ORTHO05D012335 2.1e-66 255.8 131 88.5
BolC3t17435H Brassica oleracea HOM05D017144 ORTHO05D012335 1.9e-35 152.9 133 56.4
BraSC39t46185Z Brassica rapa HOM05D000030 ORTHO05D000009 7.3e-35 151.0 133 54.9
BraA09t38501Z Brassica rapa HOM05D016652 ORTHO05D018597 4.7e-34 148.3 125 55.2
BolC3t18895H Brassica oleracea HOM05D000030 ORTHO05D000009 1.1e-33 147.1 133 53.4
BolC1t04832H Brassica oleracea HOM05D000030 ORTHO05D000009 1.4e-33 146.7 135 51.9
BolC5t31008H Brassica oleracea HOM05D000030 ORTHO05D000009 1.8e-33 146.4 133 54.1
BolC1t05119H Brassica oleracea HOM05D017144 ORTHO05D012335 2.9e-31 139.0 121 55.4
C06p50370 Brassica napus HOM05D011797 ORTHO05D012335 1.1e-30 137.1 134 48.5
C03p44060 Brassica napus HOM05D000030 ORTHO05D000009 4.1e-30 135.2 134 49.3
C01p50670 Brassica napus HOM05D000030 ORTHO05D000009 1.6e-29 133.3 112 53.6
BolC1t05016H Brassica oleracea HOM05D000030 ORTHO05D000009 1.6e-29 133.3 112 53.6
A06p33340 Brassica napus HOM05D000030 ORTHO05D012335 2.3e-28 129.4 125 52.0
BraA07t27840Z Brassica rapa HOM05D011797 ORTHO05D012335 5.6e-27 124.8 127 44.9
CARHR154270 Cardamine hirsuta HOM05D000030 ORTHO05D000009 9.6e-27 124.0 124 46.8
BolC3t15945H Brassica oleracea HOM05D016652 ORTHO05D018597 8.4e-23 110.9 127 46.5
BolC3t14201H Brassica oleracea HOM05D017144 ORTHO05D012335 4.2e-22 108.6 71 74.6
C08p02160 Brassica napus HOM05D017144 ORTHO05D012335 1.9e-19 99.8 131 45.0
THA.LOC104805034 Tarenaya hassleriana HOM05D000030 ORTHO05D000009 9.9e-16 87.4 143 33.6
A06p36340 Brassica napus HOM05D000030 ORTHO05D000009 3.8e-15 85.5 123 35.8
BraA06t26558Z Brassica rapa HOM05D000030 ORTHO05D013257 8.4e-15 84.3 127 34.6
A02p20280 Brassica napus HOM05D000030 ORTHO05D000009 9.3e-14 80.9 123 35.0
BraA02t07062Z Brassica rapa HOM05D000030 ORTHO05D000009 9.3e-14 80.9 123 35.0
PSO063G7452 Papaver somniferum HOM05D000030 ORTHO05D000009 4.6e-13 78.6 151 33.1
MD11G1111300 Malus domestica HOM05D000030 ORTHO05D000009 3.0e-12 75.9 149 34.9
Aqoxy1G03509 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 5.1e-12 75.1 138 32.6
Aqoxy7G02841 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 5.1e-12 75.1 138 32.6
AUR62023653 Chenopodium quinoa HOM05D000030 ORTHO05D000009 6.7e-12 74.7 128 32.0
FvH4_4g21073 Fragaria vesca HOM05D014239 ORTHO05D017019 6.7e-12 74.7 146 32.2
PSO384G4209 Papaver somniferum HOM05D000030 ORTHO05D000009 6.7e-12 74.7 151 32.5
COL.COLO4_37926 Corchorus olitorius HOM05D000030 ORTHO05D000009 8.7e-12 74.3 119 34.5
C02p55370 Brassica napus HOM05D056657 ORTHO05D039075 1.1e-11 73.9 35 94.3
FvH4_6g47670 Fragaria vesca HOM05D000030 ORTHO05D000009 1.1e-11 73.9 146 30.8
Lj1g0006282 Lotus japonicus HOM05D000030 ORTHO05D000009 1.1e-11 73.9 147 34.7
PSO782G3675 Papaver somniferum HOM05D000030 ORTHO05D000009 1.1e-11 73.9 151 31.8
AUR62038437 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.5e-11 73.6 157 29.9
Dinv42683 Davidia involucrata HOM05D000030 ORTHO05D029211 1.5e-11 73.6 93 38.7
FvH4_7g14271 Fragaria vesca HOM05D000030 ORTHO05D000009 1.5e-11 73.6 147 31.3
PSO170G5324 Papaver somniferum HOM05D000030 ORTHO05D000009 1.5e-11 73.6 151 31.8
FvH4_5g24030 Fragaria vesca HOM05D000030 ORTHO05D000009 1.9e-11 73.2 147 31.3
PSO017G6195 Papaver somniferum HOM05D000030 ORTHO05D000009 1.9e-11 73.2 151 31.8
PSO210G6551 Papaver somniferum HOM05D000030 ORTHO05D000009 1.9e-11 73.2 151 32.5
PSO541G2313 Papaver somniferum HOM05D000030 ORTHO05D000009 2.5e-11 72.8 151 31.8
PSO541G3730 Papaver somniferum HOM05D000030 ORTHO05D000009 2.5e-11 72.8 151 31.8
PSO832G1791 Papaver somniferum HOM05D000030 ORTHO05D000009 3.3e-11 72.4 151 31.1
Peaxi162Scf00580g00071 Petunia axillaris HOM05D000030 ORTHO05D000009 3.3e-11 72.4 128 34.4
CiPaw.03G216300 Carya illinoinensis HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 30.3
AUR62000273 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62005066 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62008567 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62012400 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62013228 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62016800 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62019746 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62020940 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62028290 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62029342 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62030133 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62034868 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
AUR62040292 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.3e-11 72.0 145 29.7
Eucgr.C01635 Eucalyptus grandis HOM05D000030 ORTHO05D000009 4.3e-11 72.0 131 35.9
MD04G1008400 Malus domestica HOM05D000030 ORTHO05D000009 4.3e-11 72.0 126 33.3
MD11G1014000 Malus domestica HOM05D000030 ORTHO05D000009 4.3e-11 72.0 126 33.3
RcHm_v2.0_Chr2g0138151 Rosa chinensis HOM05D000030 ORTHO05D000009 4.3e-11 72.0 149 31.5
AUR62008671 Chenopodium quinoa HOM05D000030 ORTHO05D000009 5.6e-11 71.6 145 29.7
PSO339G5622 Papaver somniferum HOM05D000030 ORTHO05D000009 5.6e-11 71.6 151 31.8
AUR62005292 Chenopodium quinoa HOM05D000030 ORTHO05D000009 7.4e-11 71.2 145 29.7
AUR62019622 Chenopodium quinoa HOM05D000030 ORTHO05D000009 7.4e-11 71.2 145 29.7
PGR119G1072 Punica granatum HOM05D000030 ORTHO05D000009 7.4e-11 71.2 127 33.1
VMungo0251G3648 Vigna mungo HOM05D000030 ORTHO05D000009 7.4e-11 71.2 125 32.8
EL10Ac1g01885 Beta vulgaris HOM05D000030 ORTHO05D000009 9.6e-11 70.9 131 32.1
AUR62005670 Chenopodium quinoa HOM05D000030 ORTHO05D000009 9.6e-11 70.9 145 29.7
AUR62008490 Chenopodium quinoa HOM05D000030 ORTHO05D000009 9.6e-11 70.9 145 29.7
AUR62018823 Chenopodium quinoa HOM05D000030 ORTHO05D000009 9.6e-11 70.9 145 29.7
AUR62036807 Chenopodium quinoa HOM05D000613 ORTHO05D000009 9.6e-11 70.9 145 29.7
AUR62038468 Chenopodium quinoa HOM05D000030 ORTHO05D000009 9.6e-11 70.9 145 29.7
PSO782G5700 Papaver somniferum HOM05D000030 ORTHO05D000009 9.6e-11 70.9 151 31.1
THA.LOC109116815 Tarenaya hassleriana HOM05D000030 ORTHO05D000009 9.6e-11 70.9 143 30.1
AUR62007966 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.3e-10 70.5 145 29.0
AUR62028297 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.6e-10 70.1 145 29.7
MD04G1235100 Malus domestica HOM05D000030 ORTHO05D000009 1.6e-10 70.1 126 32.5
SHI24940 Sapria himalayana HOM05D000030 ORTHO05D000009 1.6e-10 70.1 142 31.0
AUR62041304 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.1e-10 69.7 145 29.0
PGR119G1248 Punica granatum HOM05D000030 ORTHO05D000009 2.1e-10 69.7 127 33.1
AUR62037898 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.8e-10 69.3 131 29.0
PGR064G0018 Punica granatum HOM05D000030 ORTHO05D000009 2.8e-10 69.3 127 33.1
C05p34050 Brassica napus HOM05D000030 ORTHO05D000009 3.7e-10 68.9 99 34.3
PSO384G3671 Papaver somniferum HOM05D000030 ORTHO05D000009 3.7e-10 68.9 139 30.9
PGR083G0765 Punica granatum HOM05D000030 ORTHO05D000009 3.7e-10 68.9 126 31.7
PGR102G1721 Punica granatum HOM05D000030 ORTHO05D000009 3.7e-10 68.9 126 31.7
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 3.7e-10 68.9 137 30.7
AUR62020942 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.8e-10 68.6 145 29.0
HanXRQChr16g0521661 Helianthus annuus HOM05D000030 ORTHO05D000009 4.8e-10 68.6 131 29.8
HanXRQChr17g0554281 Helianthus annuus HOM05D000030 ORTHO05D000009 4.8e-10 68.6 131 29.8
SHI17057 Sapria himalayana HOM05D000030 ORTHO05D000009 4.8e-10 68.6 140 30.7
CiPaw.08G142600 Carya illinoinensis HOM05D000030 ORTHO05D000009 6.2e-10 68.2 153 26.8
PSO170G5271 Papaver somniferum HOM05D000030 ORTHO05D000009 6.2e-10 68.2 130 31.5
Aqoxy5G03110 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 8.1e-10 67.8 120 34.2
ECA240G3204 Erigeron canadensis HOM05D000030 ORTHO05D000009 8.1e-10 67.8 147 28.6
Migut.L00871 Erythranthe guttata HOM05D000030 ORTHO05D000009 8.1e-10 67.8 114 33.3
Thecc.10G137000 Theobroma cacao HOM05D000030 ORTHO05D000009 8.1e-10 67.8 143 32.9
PGR142G2060 Punica granatum HOM05D000030 ORTHO05D000009 2.4e-09 66.2 127 31.5
Atru.chr3.3246 Acer truncatum HOM05D000030 ORTHO05D000009 4.0e-09 65.5 152 30.3
AUR62034869 Chenopodium quinoa HOM05D000030 ORTHO05D000009 5.3e-09 65.1 134 29.9
AUR62039043 Chenopodium quinoa HOM05D000030 ORTHO05D000009 5.3e-09 65.1 132 29.5
Hma1.2p1_1484F.1_g286330 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 6.9e-09 64.7 144 29.9
EL10Ac8g20256 Beta vulgaris HOM05D000030 ORTHO05D000009 9.0e-09 64.3 138 28.3
AUR62040058 Chenopodium quinoa HOM05D000030 ORTHO05D000009 9.0e-09 64.3 133 28.6
Sopen03g023750 Solanum pennellii HOM05D000030 ORTHO05D000009 9.0e-09 64.3 102 35.3
AUR62014844 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.2e-08 63.9 134 29.9
AUR62017385 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.2e-08 63.9 142 28.9
AUR62041086 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.2e-08 63.9 134 29.9
SHI16775 Sapria himalayana HOM05D000030 ORTHO05D000009 1.2e-08 63.9 133 29.3
Solyc11g150102.1 Solanum lycopersicum HOM05D000030 ORTHO05D000009 1.2e-08 63.9 102 35.3
C03p70390 Brassica napus HOM05D017960 ORTHO05D018585 1.5e-08 63.5 122 30.3
AUR62009913 Chenopodium quinoa HOM05D000030 ORTHO05D001296 1.5e-08 63.5 132 29.5
AUR62034972 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.5e-08 63.5 132 29.5
Eucgr.E01324 Eucalyptus grandis HOM05D000030 ORTHO05D000009 1.5e-08 63.5 112 33.9
Sopen03g009380 Solanum pennellii HOM05D000030 ORTHO05D000009 1.5e-08 63.5 102 36.3
HanXRQChr04g0107561 Helianthus annuus HOM05D000030 ORTHO05D000009 2.6e-08 62.8 105 31.4
Atru.chr6.1428 Acer truncatum HOM05D000030 ORTHO05D000009 3.4e-08 62.4 131 29.8
AUR62043146 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.4e-08 62.4 104 35.6
EL10Ac6g13961 Beta vulgaris HOM05D000030 ORTHO05D000009 4.5e-08 62.0 139 29.5
Hma1.2p1_0608F.1_g188290 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 4.5e-08 62.0 142 27.5
FvH4_2g20291 Fragaria vesca HOM05D000030 ORTHO05D000009 5.8e-08 61.6 146 31.5
Atru.chr13.1352 Acer truncatum HOM05D000030 ORTHO05D000009 7.6e-08 61.2 138 30.4
RcHm_v2.0_Chr3g0477141 Rosa chinensis HOM05D014239 ORTHO05D017019 7.6e-08 61.2 149 30.2
BolC3t19286H Brassica oleracea HOM05D000030 ORTHO05D018585 9.9e-08 60.8 91 35.2
FvH4_6g16421 Fragaria vesca HOM05D000030 ORTHO05D000009 9.9e-08 60.8 146 30.8
Eucgr.H01031 Eucalyptus grandis HOM05D000030 ORTHO05D000009 1.3e-07 60.5 93 34.4
AUR62027899 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.7e-07 60.1 133 27.8
EL10Ac3g05892 Beta vulgaris HOM05D000030 ORTHO05D000031 2.2e-07 59.7 113 30.1
AUR62019692 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.2e-07 59.7 133 27.8
Eucgr.C01493 Eucalyptus grandis HOM05D000030 ORTHO05D000009 2.2e-07 59.7 93 35.5
Gorai.005G140200 Gossypium raimondii HOM05D000030 ORTHO05D000009 2.2e-07 59.7 155 27.1
Thecc.03G058900 Theobroma cacao HOM05D000030 ORTHO05D000009 2.2e-07 59.7 138 31.9
Thecc.08G159500 Theobroma cacao HOM05D000030 ORTHO05D000009 2.2e-07 59.7 150 31.3
THA.LOC104804917 Tarenaya hassleriana HOM05D000030 ORTHO05D000009 2.9e-07 59.3 86 37.2
Aqoxy2G01304 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 3.8e-07 58.9 158 29.1
Solyc09g063157.2 Solanum lycopersicum HOM05D000030 ORTHO05D000009 3.8e-07 58.9 85 36.5
Sopen01g026300 Solanum pennellii HOM05D000030 ORTHO05D000009 3.8e-07 58.9 85 36.5
Sopen11g012600 Solanum pennellii HOM05D000030 ORTHO05D000009 3.8e-07 58.9 85 36.5
Atru.chr6.724 Acer truncatum HOM05D000030 ORTHO05D000009 4.9e-07 58.5 161 28.6
QL02p074905 Quercus lobata HOM05D000030 ORTHO05D000009 6.4e-07 58.2 125 30.4
EL10Ac4g08877 Beta vulgaris HOM05D000030 ORTHO05D000031 8.4e-07 57.8 109 33.9
QL03p018711 Quercus lobata HOM05D000030 ORTHO05D000009 8.4e-07 57.8 125 30.4
QL03p065377 Quercus lobata HOM05D000030 ORTHO05D000009 8.4e-07 57.8 125 30.4
C08p06750 Brassica napus HOM05D017960 ORTHO05D018585 1.1e-06 57.4 90 38.9
AUR62006346 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.1e-06 57.4 54 44.4
HanXRQChr09g0242491 Helianthus annuus HOM05D000030 ORTHO05D000009 1.1e-06 57.4 93 33.3
Atru.chr10.241 Acer truncatum HOM05D000030 ORTHO05D000009 1.4e-06 57.0 130 30.0
Aqoxy3G02406 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 1.4e-06 57.0 142 31.7
PSO782G5350 Papaver somniferum HOM05D000030 ORTHO05D000009 1.4e-06 57.0 134 28.4
AUR62018675 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.9e-06 56.6 156 26.3
AUR62026250 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.9e-06 56.6 156 26.3
AUR62042655 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.9e-06 56.6 156 26.3
Rhsim06G0108000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.9e-06 56.6 137 29.2
AUR62044442 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.4e-06 56.2 51 45.1
AUR62017515 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.2e-06 55.8 121 28.1
AUR62033000 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.2e-06 55.8 54 42.6
Sopen12g016160 Solanum pennellii HOM05D000030 ORTHO05D000009 3.2e-06 55.8 79 38.0
SHI17277 Sapria himalayana HOM05D000030 ORTHO05D000009 4.2e-06 55.5 115 28.7
A08p07430 Brassica napus HOM05D000030 ORTHO05D000009 5.5e-06 55.1 68 41.2
C04p34070 Brassica napus HOM05D000030 ORTHO05D000009 5.5e-06 55.1 68 41.2
COL.COLO4_07717 Corchorus olitorius HOM05D000030 ORTHO05D000009 5.5e-06 55.1 112 32.1
COL.COLO4_19994 Corchorus olitorius HOM05D000030 ORTHO05D000009 5.5e-06 55.1 112 32.1
QL11p010017 Quercus lobata HOM05D000030 ORTHO05D000009 7.1e-06 54.7 110 33.6
QL11p010287 Quercus lobata HOM05D000030 ORTHO05D000009 7.1e-06 54.7 110 33.6


User provided reference genes

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