Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.1e-17 92.0 42 100.0
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-17 92.0 42 100.0
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-16 88.2 42 95.2
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-16 88.2 42 95.2
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.6e-16 88.2 42 95.2
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.6e-16 88.2 42 95.2
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 2.8e-16 87.4 42 95.2
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.8e-16 87.4 42 95.2
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 8.1e-16 85.9 42 92.9
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 8.1e-16 85.9 42 92.9
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.0e-14 81.3 43 90.7
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 3.8e-13 77.0 47 78.7
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-13 77.0 43 83.7
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-13 77.0 43 83.7
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 3.8e-13 77.0 43 83.7
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 3.8e-13 77.0 43 83.7
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 3.8e-13 77.0 43 83.7
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 8.4e-13 75.9 47 76.6
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 8.4e-13 75.9 47 76.6
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 8.4e-13 75.9 47 76.6
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 8.4e-13 75.9 47 76.6
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 4.2e-12 73.6 47 74.5
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-11 72.0 43 79.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.7e-11 70.9 47 72.3
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 7.9e-11 69.3 50 62.0
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-10 68.2 47 70.2
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-10 68.2 47 70.2
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-10 68.2 47 70.2
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 3.0e-10 67.4 49 63.3
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-09 65.5 49 61.2
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-09 65.5 49 61.2
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-09 65.5 42 69.0
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-09 65.5 49 61.2
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-09 65.5 42 69.0
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-09 65.5 49 61.2
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-09 65.5 49 61.2
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.9e-09 64.7 34 76.5
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.3e-09 63.9 38 65.8
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 4.3e-09 63.5 38 68.4
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 5.6e-09 63.2 42 66.7
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 5.6e-09 63.2 42 66.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 5.6e-09 63.2 42 69.0
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 5.6e-09 63.2 42 69.0
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 5.6e-09 63.2 30 83.3
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 7.4e-09 62.8 48 58.3
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 7.4e-09 62.8 47 59.6
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 7.4e-09 62.8 47 63.8
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.6e-08 61.6 47 61.7
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.1e-08 61.2 38 65.8
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.1e-08 61.2 38 65.8
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 2.1e-08 61.2 38 65.8
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.8e-08 60.8 43 65.1
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 3.7e-08 60.5 29 86.2
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.7e-08 60.5 29 86.2
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.7e-08 60.5 29 86.2
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 4.8e-08 60.1 34 67.6
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.2e-08 59.7 40 67.5
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 8.2e-08 59.3 45 60.0
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.1e-07 58.9 29 79.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-07 58.5 47 55.3
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-07 58.5 49 53.1
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 1.4e-07 58.5 29 79.3
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.4e-07 58.5 30 73.3
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.4e-07 58.5 41 63.4
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.8e-07 58.2 48 56.2
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.8e-07 58.2 31 74.2
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.4e-07 57.8 29 75.9
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.4e-07 57.8 29 75.9
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 2.4e-07 57.8 29 79.3
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 4.0e-07 57.0 29 75.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-07 57.0 28 82.1
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-07 57.0 28 85.7
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-07 57.0 28 85.7
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-07 57.0 28 85.7
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-07 57.0 28 85.7
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.0e-07 57.0 28 85.7
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.0e-07 57.0 28 85.7
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 4.0e-07 57.0 29 75.9
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 5.3e-07 56.6 29 75.9
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 5.3e-07 56.6 31 74.2
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 5.3e-07 56.6 29 79.3
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 6.9e-07 56.2 29 79.3
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 6.9e-07 56.2 48 54.2
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 6.9e-07 56.2 29 75.9
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 9.0e-07 55.8 40 62.5
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 9.0e-07 55.8 29 79.3
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 9.0e-07 55.8 44 61.4
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.2e-06 55.5 42 66.7
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.2e-06 55.5 39 61.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.2e-06 55.5 29 75.9
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.5e-06 55.1 29 79.3
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.5e-06 55.1 38 57.9
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.5e-06 55.1 47 57.4
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 1.5e-06 55.1 29 79.3
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 2.0e-06 54.7 29 75.9
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 2.0e-06 54.7 29 75.9
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.0e-06 54.7 32 68.8
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 2.6e-06 54.3 47 55.3
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 2.6e-06 54.3 47 55.3
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 2.6e-06 54.3 39 64.1
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 2.6e-06 54.3 39 59.0
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.6e-06 54.3 27 81.5
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 2.6e-06 54.3 47 55.3
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.4e-06 53.9 47 53.2
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.4e-06 53.9 29 72.4
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 4.5e-06 53.5 44 54.5
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 4.5e-06 53.5 43 53.5
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 4.5e-06 53.5 29 75.9
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 4.5e-06 53.5 30 73.3
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 5.8e-06 53.1 43 58.1
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 5.8e-06 53.1 47 55.3
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 7.6e-06 52.8 47 55.3
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 7.6e-06 52.8 47 55.3
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.0e-05 52.4 46 52.2
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.0e-05 52.4 33 60.6


User provided reference genes

Program Settings