Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 7.1e-139 497.3 255 100.0
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 7.1e-139 497.3 255 100.0
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 1.1e-136 490.0 255 98.4
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 7.4e-128 460.7 257 93.4
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 2.8e-127 458.8 257 93.4
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 5.3e-110 401.4 260 84.2
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 8.5e-84 314.3 258 69.0
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 3.2e-83 312.4 253 69.6
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 1.4e-78 297.0 261 67.8
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 1.4e-78 297.0 261 67.8
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 2.3e-76 289.7 263 66.9
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 8.6e-76 287.7 263 67.3
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 8.6e-76 287.7 263 67.3
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 3.4e-72 275.8 240 66.2
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 8.3e-71 271.2 237 66.2
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 7.0e-70 268.1 262 64.9
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.6e-69 266.9 256 61.3
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.0e-68 264.2 252 62.7
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 5.0e-68 261.9 259 62.2
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.3e-47 194.1 259 49.4
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 1.7e-47 193.7 265 48.3
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 4.9e-47 192.2 269 49.1
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 6.4e-47 191.8 271 47.2
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 8.3e-47 191.4 276 46.0
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 1.0e-44 184.5 216 54.6
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.8e-42 176.4 275 47.3
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 3.6e-42 176.0 275 44.7
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 6.2e-42 175.3 270 44.8
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 8.9e-41 171.4 270 44.8
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 7.6e-40 168.3 265 42.6
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 2.9e-39 166.4 271 43.5
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 4.9e-39 165.6 261 44.8
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 1.4e-38 164.1 261 45.2
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.9e-38 163.7 261 44.4
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 2.4e-38 163.3 261 44.4
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 2.7e-37 159.8 261 43.7
BcaB01g00240 Brassica carinata HOM05D003173 ORTHO05D003546 1.0e-36 157.9 181 58.0
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 1.0e-36 157.9 275 41.8
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 3.3e-35 152.9 282 40.8
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 4.2e-30 136.0 212 45.8
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 5.1e-28 129.0 248 40.7
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 7.3e-27 125.2 258 37.6
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 9.0e-25 118.2 262 36.6
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 2.6e-24 116.7 271 35.4
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 2.6e-24 116.7 261 34.5
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 5.8e-24 115.5 263 33.1
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.8e-23 112.8 272 35.7
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 6.4e-23 112.1 271 35.1
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 5.4e-22 109.0 264 35.2
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.7e-21 106.7 264 31.8
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 2.7e-21 106.7 252 32.1
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 4.6e-21 105.9 262 34.7
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 4.6e-21 105.9 228 37.7
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 6.0e-21 105.5 260 32.7
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 1.0e-20 104.8 232 36.6
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.3e-20 104.4 258 32.9
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 3.0e-20 103.2 272 33.5
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 6.7e-20 102.1 271 33.6
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 8.7e-20 101.7 277 33.2
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.1e-19 101.3 267 33.7
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.1e-19 101.3 235 34.9
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 1.9e-19 100.5 288 33.3
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 1.9e-19 100.5 254 33.1
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 1.9e-19 100.5 260 33.5
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 2.5e-19 100.1 270 35.2
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 3.3e-19 99.8 240 32.5
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 4.3e-19 99.4 287 32.8
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 5.6e-19 99.0 273 35.9
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 7.4e-19 98.6 272 32.7
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 7.4e-19 98.6 274 30.3
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 9.6e-19 98.2 271 32.5
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 1.3e-18 97.8 287 32.4
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 1.6e-18 97.4 264 33.7
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 2.8e-18 96.7 272 33.8
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 3.7e-18 96.3 255 34.1
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 3.7e-18 96.3 230 33.0
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 4.8e-18 95.9 240 32.9
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 8.1e-18 95.1 260 33.1
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.4e-17 93.6 229 32.8
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.4e-17 93.6 251 30.7
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 4.0e-17 92.8 140 42.9
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 4.0e-17 92.8 258 31.8
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 4.0e-17 92.8 256 32.4
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 5.3e-17 92.4 256 34.0
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 9.0e-17 91.7 255 31.8
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 1.5e-16 90.9 269 30.1
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 2.6e-16 90.1 275 30.5
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 2.6e-16 90.1 257 32.3
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 3.4e-16 89.7 249 31.7
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 4.5e-16 89.4 256 32.8
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 4.5e-16 89.4 246 30.5
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 4.5e-16 89.4 255 31.0
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 1.0e-15 88.2 258 28.7
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 1.0e-15 88.2 269 32.3
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.3e-15 87.8 256 33.6
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 1.7e-15 87.4 230 32.2
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 1.7e-15 87.4 256 30.9
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 1.7e-15 87.4 246 30.5
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 2.2e-15 87.0 244 34.0
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 3.8e-15 86.3 222 32.0
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 3.8e-15 86.3 272 29.4
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 4.9e-15 85.9 220 30.0
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 4.9e-15 85.9 265 30.9
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 6.5e-15 85.5 257 31.9
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 6.5e-15 85.5 264 30.3
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 6.5e-15 85.5 280 32.1
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 8.4e-15 85.1 302 30.8
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 8.4e-15 85.1 256 30.9
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.1e-14 84.7 233 32.6
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 1.1e-14 84.7 252 33.3
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 1.4e-14 84.3 260 32.7
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 1.9e-14 84.0 286 29.7
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.9e-14 84.0 265 29.8
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 1.9e-14 84.0 248 30.2
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 2.5e-14 83.6 294 30.3
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 2.5e-14 83.6 267 31.5
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 3.2e-14 83.2 279 30.5
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 3.2e-14 83.2 245 32.7
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 5.5e-14 82.4 271 29.5
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 7.1e-14 82.0 179 31.3
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 7.1e-14 82.0 261 29.9
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 1.6e-13 80.9 262 30.9
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.7e-13 80.1 231 31.6
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 2.7e-13 80.1 269 29.4
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 3.5e-13 79.7 261 29.1
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 4.6e-13 79.3 267 30.7
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 7.9e-13 78.6 273 27.8
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 7.9e-13 78.6 268 26.1
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 1.0e-12 78.2 254 31.1
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 1.3e-12 77.8 273 26.7
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 1.3e-12 77.8 252 28.6
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.3e-12 77.0 228 28.9
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 3.0e-12 76.6 228 28.9
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 6.7e-12 75.5 255 30.6
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 6.7e-12 75.5 260 28.1
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 1.1e-11 74.7 223 31.4
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.1e-11 74.7 262 30.9
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 3.3e-11 73.2 292 26.0
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 4.3e-11 72.8 268 29.5
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 5.7e-11 72.4 253 30.0
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 7.4e-11 72.0 264 31.4
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 7.4e-11 72.0 223 31.4
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 9.6e-11 71.6 269 29.4
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 1.3e-10 71.2 248 27.0
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 1.3e-10 71.2 242 31.0
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 1.3e-10 71.2 300 26.0
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 1.6e-10 70.9 276 28.3
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 2.1e-10 70.5 206 36.9
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 2.1e-10 70.5 222 28.8
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 2.8e-10 70.1 262 29.0
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 3.7e-10 69.7 183 32.2
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 3.7e-10 69.7 262 30.5
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 4.8e-10 69.3 182 34.1
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 6.3e-10 68.9 189 32.3
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 6.3e-10 68.9 189 32.3
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 1.1e-09 68.2 276 27.5
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 1.4e-09 67.8 210 29.5
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 4.1e-09 66.2 235 29.8
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 6.9e-09 65.5 234 29.9
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 6.9e-09 65.5 245 31.4
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 1.2e-08 64.7 256 27.3
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 2.0e-08 63.9 266 28.6
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 7.6e-08 62.0 221 26.2
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 2.2e-07 60.5 267 27.0
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.9e-07 60.1 191 30.9
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 3.8e-07 59.7 209 31.1
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 8.4e-07 58.5 209 31.1
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 8.4e-07 58.5 163 31.9
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 1.4e-06 57.8 194 27.8
HanXRQChr12g0366681 Helianthus annuus HOM05D003173 ORTHO05D003546 1.9e-06 57.4 235 25.1
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 3.2e-06 56.6 225 27.6
TPR.G32014 Trifolium pratense HOM05D003173 ORTHO05D003546 3.2e-06 56.6 173 29.5


User provided reference genes

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