Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 5.1e-51 204.1 104 100.0
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 5.1e-51 204.1 104 100.0
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 3.3e-50 201.4 104 99.0
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 3.3e-50 201.4 104 99.0
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.3e-35 152.1 99 83.8
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.3e-35 152.1 99 83.8
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.3e-35 152.1 99 83.8
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 4.3e-34 147.9 101 81.2
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 4.3e-34 147.9 76 98.7
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.7e-33 144.8 97 77.3
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 6.9e-32 140.6 99 79.8
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 6.9e-32 140.6 99 79.8
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.9e-29 132.5 97 70.1
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.9e-27 124.8 97 70.1
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 3.3e-26 121.7 97 67.0
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 9.6e-26 120.2 97 67.0
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.0e-22 110.2 98 62.2
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 7.2e-21 104.0 102 56.9
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 5.0e-14 81.3 99 49.5
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.5e-14 80.9 102 47.1
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.4e-13 79.7 101 49.5
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 2.1e-12 75.9 100 45.0
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 6.1e-12 74.3 101 44.6
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 7.9e-12 73.9 103 44.7
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.0e-11 73.6 102 48.0
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.8e-11 72.8 102 43.1
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 2.3e-11 72.4 103 41.7
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 3.9e-11 71.6 96 45.8
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 3.9e-11 71.6 96 45.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 3.9e-11 71.6 96 45.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-10 70.1 103 41.7
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-10 69.7 103 40.8
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 2.0e-10 69.3 97 43.3
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.0e-10 69.3 102 46.1
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 2.5e-10 68.9 97 42.3
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 2.5e-10 68.9 97 42.3
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 2.5e-10 68.9 97 42.3
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 3.3e-10 68.6 103 40.8
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 3.3e-10 68.6 101 38.6
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.7e-09 66.2 104 42.3
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.7e-09 66.2 104 42.3
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.8e-09 65.5 92 41.3
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.7e-09 65.1 103 39.8
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.7e-09 65.1 103 39.8
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 3.7e-09 65.1 102 41.2
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 3.7e-09 65.1 104 40.4
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.3e-09 64.3 107 40.2
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.1e-08 63.5 104 40.4
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.1e-08 63.5 95 43.2
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.8e-08 62.8 98 41.8
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 2.4e-08 62.4 89 41.6
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 3.1e-08 62.0 102 41.2
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 4.1e-08 61.6 91 44.0
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.2e-07 60.1 85 43.5
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.2e-07 60.1 103 41.7
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.2e-07 60.1 104 40.4
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.2e-07 60.1 104 40.4
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.4e-07 58.5 100 38.0
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.5e-07 58.2 102 38.2
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 4.5e-07 58.2 87 41.4
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.9e-07 57.8 102 38.2
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 5.9e-07 57.8 103 38.8
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 5.9e-07 57.8 92 40.2
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 7.7e-07 57.4 107 40.2
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 7.7e-07 57.4 92 38.0
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.0e-06 57.0 108 39.8
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.0e-06 57.0 102 39.2
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 1.0e-06 57.0 96 43.8
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 1.3e-06 56.6 111 36.9
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.7e-06 56.2 109 40.4
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.7e-06 56.2 103 36.9
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 2.2e-06 55.8 104 38.5
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.9e-06 55.5 105 39.0
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.8e-06 55.1 104 38.5
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.8e-06 55.1 97 40.2
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 5.0e-06 54.7 107 41.1
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 6.5e-06 54.3 105 37.1
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.5e-06 53.9 101 39.6
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 8.5e-06 53.9 98 42.9
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 8.5e-06 53.9 106 40.6
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 8.5e-06 53.9 100 38.0


User provided reference genes

Program Settings