Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 2.4e-254 881.7 460 100.0
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 3.0e-244 848.2 463 96.3
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 2.8e-242 841.6 463 95.7
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 6.5e-207 724.2 482 84.0
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 6.9e-193 677.6 481 79.6
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 2.5e-182 642.5 483 76.6
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 1.2e-181 640.2 476 76.7
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 1.6e-181 639.8 478 77.0
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 3.1e-177 625.5 472 77.1
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 2.2e-175 619.4 482 74.9
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 2.3e-135 486.5 492 62.0
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 2.9e-106 389.8 523 52.2
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 5.1e-79 299.3 497 45.3
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 2.6e-70 270.4 515 43.3
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 4.1e-68 263.1 485 42.9
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 6.9e-68 262.3 507 42.2
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 9.1e-68 261.9 494 42.9
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 1.3e-66 258.1 503 41.7
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 2.5e-65 253.8 527 40.4
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 3.2e-65 253.4 504 43.5
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 1.2e-64 251.5 137 98.5
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 2.1e-64 250.8 504 41.1
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 2.0e-62 244.2 490 40.2
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 2.0e-62 244.2 494 40.5
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 3.3e-62 243.4 498 40.8
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 7.4e-62 242.3 490 41.0
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.7e-61 241.1 491 39.7
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 2.2e-61 240.7 492 41.3
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.1e-60 238.4 497 41.0
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 1.1e-60 238.4 485 39.0
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.8e-60 237.7 513 39.2
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 5.3e-60 236.1 496 39.9
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 5.0e-58 229.6 538 38.8
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.2e-57 226.9 544 37.7
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 5.5e-57 226.1 513 38.6
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 6.7e-55 219.2 497 40.2
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 8.8e-55 218.8 486 37.9
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 1.8e-52 211.1 507 37.3
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 1.2e-51 208.4 490 37.8
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 1.1e-49 201.8 345 44.9
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 3.2e-49 200.3 487 38.6
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 4.2e-49 199.9 470 39.6
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 1.0e-47 195.3 399 39.1
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 1.2e-46 191.8 296 46.3
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 2.6e-46 190.7 490 36.7
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 1.1e-44 185.3 519 36.4
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 2.4e-44 184.1 497 37.0
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 9.1e-44 182.2 583 33.8
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 4.5e-43 179.9 393 40.2
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 5.9e-43 179.5 450 35.1
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 2.3e-42 177.6 380 38.7
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 6.5e-42 176.0 575 33.7
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 8.6e-42 175.6 380 38.7
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 2.8e-40 170.6 346 39.3
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 5.2e-39 166.4 468 33.3
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 6.8e-39 166.0 460 35.4
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 7.5e-38 162.5 498 34.1
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 2.8e-37 160.6 483 36.6
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 4.9e-37 159.8 454 35.7
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 2.4e-36 157.5 473 31.7
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 5.4e-36 156.4 352 36.1
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 9.2e-36 155.6 521 34.5
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 1.2e-35 155.2 485 34.6
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 1.6e-35 154.8 552 33.2
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 2.1e-32 144.4 495 31.7
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 6.1e-32 142.9 343 35.9
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 6.1e-32 142.9 343 35.9
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 3.0e-31 140.6 429 33.3
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 3.7e-29 133.7 195 46.7
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 4.9e-29 133.3 347 33.7
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 8.3e-29 132.5 454 33.0
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 9.2e-28 129.0 539 29.7
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 3.5e-27 127.1 492 30.5
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 1.7e-26 124.8 473 31.3
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 8.6e-26 122.5 400 33.2
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 1.1e-25 122.1 352 30.4
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 3.3e-25 120.6 329 35.9
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 4.7e-24 116.7 386 32.6
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 4.7e-24 116.7 359 30.6
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 8.0e-24 115.9 234 42.3
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.4e-23 115.2 371 32.6
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.4e-23 115.2 364 31.6
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 2.3e-23 114.4 384 32.3
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 2.3e-23 114.4 440 34.3
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 4.0e-23 113.6 332 33.1
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 8.9e-23 112.5 470 30.4
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 2.0e-22 111.3 367 29.7
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 3.4e-22 110.5 309 34.0
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 7.5e-22 109.4 332 32.8
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 9.8e-22 109.0 399 32.1
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 1.3e-21 108.6 497 29.0
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.9e-20 104.8 435 28.5
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 3.2e-20 104.0 334 32.6
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 2.0e-19 101.3 332 31.3
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 6.0e-19 99.8 396 28.5
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 6.0e-19 99.8 424 30.4
BolC7t42914H Brassica oleracea HOM05D005512 ORTHO05D006716 3.9e-18 97.1 221 38.5
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 1.1e-17 95.5 180 40.0
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 1.9e-17 94.7 183 39.3
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 2.5e-17 94.4 175 40.0
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 3.3e-17 94.0 212 38.2
C07p23930 Brassica napus HOM05D005512 ORTHO05D006716 4.3e-17 93.6 67 74.6
BolC7t42915H Brassica oleracea HOM05D005512 ORTHO05D006716 4.3e-17 93.6 67 74.6
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 4.7e-16 90.1 392 30.9
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 4.7e-16 90.1 136 40.4
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 6.2e-16 89.7 494 26.3
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 8.1e-16 89.4 99 53.5
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.2e-14 85.5 312 29.8
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 1.5e-14 85.1 104 50.0
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 4.4e-14 83.6 136 39.0
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 5.8e-14 83.2 243 35.8
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 2.9e-13 80.9 481 28.1
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 1.1e-12 79.0 228 35.5
C07p23920 Brassica napus HOM05D005512 ORTHO05D006716 1.9e-12 78.2 91 57.1
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 2.4e-12 77.8 369 28.2
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 5.4e-12 76.6 181 37.6
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 9.2e-12 75.9 316 25.9
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 3.5e-11 73.9 87 49.4
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.0e-10 72.4 164 40.9
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 1.0e-10 72.4 202 36.1
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 1.7e-10 71.6 425 25.2
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 2.3e-10 71.2 208 35.1
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 3.3e-09 67.4 331 27.8
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 1.6e-08 65.1 297 25.6
SMO351G0354 Selaginella moellendorffii HOM05D005512 ORTHO05D006716 3.6e-08 63.9 95 48.4
Mapoly0016s0098 Marchantia polymorpha HOM05D005512 ORTHO05D006716 6.8e-07 59.7 186 30.1
C07p23910 Brassica napus HOM05D005512 ORTHO05D006716 1.2e-06 58.9 76 53.9
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 9.9e-06 55.8 457 25.6


User provided reference genes

Program Settings