Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1644.0 816 100.0
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 0.0e+00 1598.6 820 96.6
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1520.0 821 92.6
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 0.0e+00 1520.0 821 92.6
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 0.0e+00 1348.6 834 81.8
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1341.3 834 82.5
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 0.0e+00 1331.6 833 82.0
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 0.0e+00 1307.7 832 80.3
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 0.0e+00 1280.0 831 78.7
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 0.0e+00 1263.8 835 77.8
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 0.0e+00 1247.3 823 76.9
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 0.0e+00 1213.7 831 75.5
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 0.0e+00 1213.0 806 76.8
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 0.0e+00 1187.9 830 73.5
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 0.0e+00 1090.1 709 78.4
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 1.4e-308 1062.8 839 66.4
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 4.3e-270 934.9 851 58.8
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.8e-220 770.0 853 49.8
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 8.5e-218 761.1 863 50.5
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 3.2e-217 759.2 857 49.8
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 2.3e-215 753.1 863 50.1
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.5e-214 750.4 892 49.0
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 9.7e-214 747.7 878 48.4
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.6e-211 739.6 866 47.7
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.4e-209 733.8 891 47.9
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 9.4e-209 731.1 932 44.7
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 9.4e-209 731.1 867 48.4
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.2e-208 730.7 853 48.9
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 3.6e-208 729.2 873 48.1
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 2.3e-207 726.5 999 43.3
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.2e-203 714.1 813 46.4
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 7.7e-203 711.4 741 52.4
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 5.5e-201 705.3 796 49.9
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.4e-199 700.7 878 46.4
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 9.7e-198 694.5 988 43.9
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 8.5e-194 681.4 992 41.2
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 2.1e-192 676.8 1014 40.9
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 6.1e-192 675.2 865 47.1
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 8.8e-191 671.4 837 45.3
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.3e-189 667.5 897 45.8
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 8.2e-189 664.8 925 43.1
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 2.4e-188 663.3 890 43.7
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.6e-187 660.6 1049 39.4
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.7e-186 657.1 956 40.9
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 5.0e-186 655.6 724 50.3
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 8.0e-184 648.3 875 45.8
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.0e-183 647.9 864 43.1
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 3.0e-183 646.4 1056 38.6
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 2.0e-182 643.7 887 42.1
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 9.8e-182 641.3 906 42.2
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 4.8e-181 639.0 844 45.3
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 7.0e-180 635.2 711 48.2
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 9.1e-180 634.8 909 44.0
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 2.7e-179 633.3 1053 39.0
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 5.0e-178 629.0 863 44.5
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 6.5e-178 628.6 792 43.9
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 1.9e-177 627.1 913 40.6
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 6.1e-176 622.1 954 41.3
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 2.3e-175 620.2 1015 40.8
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 5.7e-174 615.5 888 41.6
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 7.5e-174 615.1 1001 39.5
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 3.7e-173 612.8 909 40.5
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 3.7e-173 612.8 934 42.3
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 2.4e-172 610.1 923 40.3
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 2.4e-172 610.1 941 41.0
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.2e-171 607.8 958 40.5
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.2e-171 607.8 958 40.5
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 1.6e-171 607.4 1023 37.5
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 4.5e-171 605.9 1017 37.5
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 3.3e-169 599.7 1072 37.8
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.2e-168 597.8 1082 35.9
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.0e-167 594.7 880 41.8
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 8.9e-167 591.7 814 43.1
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 2.0e-166 590.5 1053 38.1
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 7.5e-166 588.6 1060 37.3
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 4.9e-165 585.9 1053 37.5
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.0e-164 582.0 1021 38.7
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 8.6e-162 575.1 972 37.0
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 3.6e-160 569.7 804 42.3
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 4.0e-159 566.2 1007 37.2
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 4.0e-159 566.2 827 41.5
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 6.8e-159 565.5 1002 36.0
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 6.8e-159 565.5 899 38.7
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.6e-158 563.5 889 39.0
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 1.3e-157 561.2 893 39.2
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 9.2e-156 555.1 907 38.5
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 1.3e-154 551.2 837 39.9
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.6e-154 548.9 1074 36.3
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 8.6e-154 548.5 494 57.5
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 7.3e-153 545.4 829 42.3
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.8e-152 543.5 902 39.4
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.6e-152 543.1 1075 35.1
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 8.1e-152 542.0 1129 33.9
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.0e-151 539.7 801 41.6
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 5.2e-151 539.3 924 37.9
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.6e-144 517.7 600 47.0
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 3.8e-141 506.5 726 43.5
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.1e-135 488.4 818 36.2
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.2e-134 485.0 550 46.9
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.5e-134 484.6 649 45.1
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 2.0e-134 484.2 1175 31.7
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 2.1e-128 464.2 790 36.5
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.6e-128 463.4 802 37.7
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 2.6e-118 430.6 640 40.2
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.3e-117 428.3 934 34.0
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 8.7e-114 415.6 677 38.0
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 4.3e-113 413.3 671 37.9
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 1.6e-112 411.4 497 44.1
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 4.9e-109 399.8 303 60.4
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.5e-105 388.3 498 43.6
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 4.6e-99 366.7 797 32.5
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.3e-96 358.6 315 57.5
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 2.4e-95 354.4 744 34.1
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 1.9e-92 344.7 812 32.4
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 9.1e-71 272.7 530 34.7
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.6e-67 260.8 293 48.1
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.2e-51 209.1 351 39.9
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 1.2e-51 209.1 626 29.2
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.6e-51 207.6 280 41.1
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 3.4e-49 201.1 331 34.1
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 3.2e-47 194.5 288 42.7
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 3.2e-47 194.5 358 39.1
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.0e-47 193.4 226 49.1
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 4.6e-46 190.7 225 48.4
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.3e-44 184.5 236 46.2
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.6e-43 182.2 131 62.6
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.5e-36 159.1 213 45.1
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.8e-34 150.2 208 44.2
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 2.2e-32 145.2 103 62.1
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 4.9e-32 144.1 203 37.9
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 8.3e-32 143.3 218 39.0
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.3e-28 130.2 232 38.8
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 3.1e-26 124.8 216 39.4
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.2e-25 122.9 338 28.7
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 2.6e-25 121.7 134 48.5
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 5.8e-25 120.6 211 40.3
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 9.9e-25 119.8 184 39.1
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 6.4e-24 117.1 206 38.3
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 8.4e-24 116.7 106 52.8
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 2.6e-17 95.1 191 37.7
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.3e-16 92.8 59 67.8
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.6e-14 85.9 119 39.5
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.6e-14 85.9 118 47.5
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 9.6e-12 76.6 183 35.0
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.4e-10 72.0 99 39.4
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 3.4e-09 68.2 156 33.3
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 3.4e-09 68.2 51 56.9
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 4.5e-09 67.8 133 33.8


User provided reference genes

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