Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 2.4e-187 658.7 332 100.0
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 2.4e-187 658.7 332 100.0
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 2.8e-175 618.6 333 94.9
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 2.8e-175 618.6 333 94.9
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 2.6e-173 612.1 332 94.9
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 4.0e-166 588.2 342 90.1
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.4e-155 553.1 340 83.8
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 5.4e-155 551.2 339 83.2
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.6e-154 549.7 339 84.1
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.3e-152 542.0 339 82.6
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.7e-151 538.1 339 81.7
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.1e-150 537.0 339 81.1
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.5e-133 479.9 342 73.7
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 2.7e-114 416.0 343 69.1
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 3.3e-96 355.9 272 68.0
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 5.7e-96 355.1 346 59.2
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 4.8e-95 352.1 339 58.4
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.1e-94 350.9 318 60.1
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 4.1e-94 349.0 329 60.8
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 2.2e-92 343.2 331 58.9
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.9e-92 342.8 318 59.1
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.9e-92 342.8 257 68.9
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.1e-91 340.9 257 68.5
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.9e-91 340.1 332 57.5
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 9.4e-91 337.8 341 55.7
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 2.7e-90 336.3 338 56.8
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.7e-90 336.3 254 68.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.8e-89 333.6 255 69.0
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.8e-89 333.6 310 58.1
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 6.7e-89 331.6 328 57.0
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 2.6e-88 329.7 233 72.5
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 2.6e-88 329.7 327 56.3
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 2.6e-88 329.7 314 57.6
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 7.4e-88 328.2 315 56.8
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.8e-87 325.5 330 55.2
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.4e-86 323.9 265 61.5
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 3.1e-86 322.8 334 57.8
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 4.1e-86 322.4 304 59.5
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 4.1e-86 322.4 269 62.1
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 4.1e-86 322.4 313 57.8
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.2e-85 320.9 350 54.3
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 2.5e-83 313.2 360 53.3
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 4.2e-83 312.4 209 74.6
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 7.2e-83 311.6 339 55.5
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 7.2e-83 311.6 312 56.1
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 4.7e-82 308.9 310 55.8
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.0e-81 307.8 341 52.5
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.8e-81 307.0 329 54.1
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.3e-81 306.6 345 53.6
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.2e-80 304.3 266 60.9
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 1.2e-80 304.3 311 55.3
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.3e-80 302.8 334 53.6
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 7.5e-80 301.6 308 55.2
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 7.5e-80 301.6 236 66.9
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.7e-79 300.4 324 52.8
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 2.2e-79 300.1 268 59.7
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 6.3e-79 298.5 365 48.2
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 8.2e-79 298.1 337 50.4
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 1.4e-78 297.4 318 53.8
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 7.0e-78 295.0 220 65.9
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 3.5e-77 292.7 232 65.1
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.7e-76 290.4 342 52.3
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 2.9e-76 289.7 238 62.6
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 5.0e-76 288.9 244 61.5
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.5e-76 288.5 336 49.4
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.5e-75 287.3 214 65.4
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 3.2e-75 286.2 232 63.4
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 4.2e-75 285.8 215 64.7
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.2e-74 284.3 318 51.3
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.8e-73 280.4 264 57.2
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.8e-73 280.4 264 57.2
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 3.0e-73 279.6 216 66.2
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 8.8e-73 278.1 231 61.0
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.7e-71 273.9 348 44.3
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.4e-70 270.0 232 59.1
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 4.1e-70 269.2 245 58.8
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 2.9e-68 263.1 250 57.2
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 8.6e-68 261.5 336 48.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.5e-67 260.8 343 46.9
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 9.5e-67 258.1 263 55.9
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 9.5e-67 258.1 238 55.9
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 3.6e-66 256.1 234 59.4
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.5e-64 250.8 208 63.9
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.0e-64 250.4 316 49.4
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 9.8e-64 248.1 346 47.7
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 9.8e-64 248.1 283 48.4
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 9.8e-64 248.1 259 53.7
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-63 247.3 314 47.5
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.8e-63 246.5 314 47.5
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.9e-63 245.7 293 50.9
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 6.3e-63 245.4 260 50.4
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.6e-61 240.7 315 47.0
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.0e-60 238.0 320 45.3
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 5.0e-60 235.7 340 47.9
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.6e-60 235.3 234 50.0
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 1.9e-59 233.8 204 60.8
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.5e-59 233.4 204 60.8
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 3.3e-59 233.0 226 55.8
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 8.9e-57 224.9 327 42.8
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 7.5e-56 221.9 211 56.9
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 1.3e-55 221.1 212 53.8
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 4.1e-54 216.1 364 40.9
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.2e-53 214.5 263 45.6
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-52 210.7 202 57.9
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.9e-52 209.5 341 42.8
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 7.3e-51 205.3 249 48.6
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 2.8e-50 203.4 321 40.8
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.8e-50 203.4 132 78.8
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 6.2e-50 202.2 196 54.6
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 6.2e-50 202.2 334 41.6
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 3.1e-49 199.9 294 42.5
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.2e-48 198.0 271 43.9
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 2.0e-48 197.2 320 39.7
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.2e-47 193.7 287 41.5
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 1.2e-45 188.0 341 39.9
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 2.1e-45 187.2 131 74.0
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 6.6e-44 182.2 324 36.4
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.5e-43 181.0 283 41.7
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 3.3e-43 179.9 199 48.7
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.2e-42 177.9 161 58.4
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 8.1e-42 175.3 302 40.4
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 8.1e-42 175.3 167 55.1
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.1e-41 174.9 250 42.4
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.8e-41 174.1 136 64.7
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 7.5e-40 168.7 320 39.7
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 1.3e-39 167.9 334 38.0
BcaC07g37986 Brassica carinata HOM05D004908 ORTHO05D027361 3.7e-39 166.4 114 78.9
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.9e-38 164.1 171 56.7
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.2e-38 163.3 247 41.3
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 8.6e-36 155.2 222 38.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.5e-35 154.5 146 58.9
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.6e-34 151.0 218 44.5
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.3e-31 141.4 122 63.1
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 3.2e-30 136.7 120 56.7
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 4.2e-30 136.3 189 43.4
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.5e-29 133.3 102 66.7
BcaC02g11039 Brassica carinata HOM05D004908 ORTHO05D027361 1.7e-28 131.0 122 62.3
BolC4t23709H Brassica oleracea HOM05D004908 ORTHO05D027361 1.7e-28 131.0 127 63.0
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 2.5e-27 127.1 76 84.2
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.6e-26 124.4 92 65.2
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 6.2e-26 122.5 111 56.8
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.1e-26 122.1 77 76.6
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.1e-25 121.7 157 43.9
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 8.4e-23 112.1 340 32.4
BraA07t28215Z Brassica rapa HOM05D004908 ORTHO05D027361 1.7e-20 104.4 79 72.2
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 2.3e-20 104.0 71 67.6
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 4.8e-18 96.3 196 36.2
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 1.8e-17 94.4 73 68.5
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-17 92.0 97 42.3
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.3e-15 88.2 86 58.1
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.3e-09 66.2 43 69.8


User provided reference genes

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