Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 2.6e-49 198.4 98 100.0
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 5.8e-49 197.2 98 99.0
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 6.5e-48 193.7 98 96.9
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 2.5e-47 191.8 98 95.9
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 2.7e-46 188.3 99 96.0
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 3.5e-46 188.0 99 96.0
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.1e-42 176.4 98 86.7
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.8e-42 175.6 98 86.7
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.8e-42 175.6 98 86.7
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 2.4e-42 175.3 98 85.7
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 2.4e-42 175.3 98 85.7
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 2.6e-41 171.8 98 84.7
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 8.5e-40 166.8 95 85.3
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.4e-39 166.0 93 84.9
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 7.9e-38 160.2 93 82.8
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 1.8e-37 159.1 90 84.4
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 3.0e-37 158.3 98 78.6
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 3.3e-36 154.8 91 84.6
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 5.9e-25 117.5 98 63.3
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 5.9e-25 117.5 105 61.0
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 1.3e-24 116.3 105 61.0
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.2e-24 115.5 105 60.0
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 2.9e-24 115.2 103 61.2
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 3.8e-24 114.8 106 64.2
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 3.8e-24 114.8 103 61.2
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 3.8e-24 114.8 103 61.2
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 3.8e-24 114.8 103 61.2
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 8.5e-24 113.6 104 61.5
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 8.5e-24 113.6 104 61.5
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.1e-23 113.2 105 61.0
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 1.5e-23 112.8 106 59.4
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 2.5e-23 112.1 103 62.1
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 2.5e-23 112.1 103 62.1
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 2.5e-23 112.1 103 62.1
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 2.5e-23 112.1 107 57.9
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 3.2e-23 111.7 104 61.5
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 4.2e-23 111.3 102 62.7
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 4.2e-23 111.3 105 60.0
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 7.2e-23 110.5 98 62.2
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 3.6e-22 108.2 106 57.5
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 8.0e-22 107.1 102 58.8
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 4.8e-19 97.8 99 57.6
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.7e-16 89.4 113 48.7
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.5e-15 86.3 97 50.5
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.4e-13 79.7 101 49.5
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 6.8e-13 77.4 72 59.7
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 4.8e-11 71.2 86 46.5
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 4.1e-10 68.2 88 46.6
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 4.1e-10 68.2 96 41.7
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 5.4e-10 67.8 99 44.4
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 5.4e-10 67.8 91 41.8
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 7.0e-10 67.4 99 44.4
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 7.0e-10 67.4 99 44.4
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.6e-09 66.2 89 43.8
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 2.0e-09 65.9 87 41.4
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 2.7e-09 65.5 100 43.0
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 3.5e-09 65.1 88 44.3
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 3.5e-09 65.1 101 40.6
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.7e-09 63.9 102 37.3
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 7.7e-09 63.9 108 38.0
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.0e-08 63.5 104 37.5
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.3e-08 63.2 84 42.9
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 1.3e-08 63.2 100 44.0
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.7e-08 62.8 97 39.2
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.7e-08 62.8 98 39.8
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.7e-08 62.8 97 41.2
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 2.2e-08 62.4 118 34.7
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.2e-08 62.4 90 43.3
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 2.9e-08 62.0 99 40.4
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.9e-08 62.0 94 39.4
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 2.9e-08 62.0 106 37.7
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 3.8e-08 61.6 107 39.3
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 5.0e-08 61.2 103 36.9
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 6.5e-08 60.8 113 35.4
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 8.5e-08 60.5 104 40.4
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.1e-07 60.1 44 61.4
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.5e-07 59.7 100 38.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.5e-07 59.7 100 38.0
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.9e-07 59.3 84 40.5
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.9e-07 59.3 88 39.8
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.9e-07 59.3 100 39.0
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.9e-07 59.3 100 39.0
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.5e-07 58.9 89 42.7
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.5e-07 58.9 104 37.5
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.2e-07 58.5 36 75.0
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 3.2e-07 58.5 82 41.5
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 3.2e-07 58.5 105 39.0
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.2e-07 58.5 99 40.4
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.2e-07 58.5 104 35.6
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 3.2e-07 58.5 109 36.7
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 3.2e-07 58.5 89 38.2
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 7.2e-07 57.4 107 37.4
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 7.2e-07 57.4 96 35.4
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 7.2e-07 57.4 93 37.6
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 9.4e-07 57.0 47 61.7
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 9.4e-07 57.0 90 35.6
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 9.4e-07 57.0 93 39.8
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.6e-06 56.2 83 44.6
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 1.6e-06 56.2 95 40.0
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.6e-06 56.2 93 36.6
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.6e-06 56.2 90 41.1
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 2.1e-06 55.8 97 37.1
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.7e-06 55.5 83 44.6
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.7e-06 55.5 83 44.6
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 2.7e-06 55.5 88 43.2
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 2.7e-06 55.5 93 35.5
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 2.7e-06 55.5 103 39.8
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 3.6e-06 55.1 95 40.0
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 6.1e-06 54.3 90 41.1
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.1e-06 54.3 102 39.2
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 8.0e-06 53.9 87 40.2
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 8.0e-06 53.9 111 36.0
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.0e-06 53.9 93 35.5
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 8.0e-06 53.9 34 73.5
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 8.0e-06 53.9 118 32.2
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 8.0e-06 53.9 93 36.6


User provided reference genes

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