Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 0.0e+00 1345.5 672 100.0
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 0.0e+00 1322.4 672 98.4
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 0.0e+00 1320.1 672 98.1
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 0.0e+00 1315.8 699 95.3
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 0.0e+00 1138.3 683 83.0
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 0.0e+00 1116.7 681 82.8
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 4.6e-312 1073.9 685 79.9
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 6.9e-311 1070.1 683 78.0
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 2.2e-304 1048.5 531 99.1
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.8e-303 1045.4 691 78.1
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.7e-286 988.4 648 75.6
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 4.4e-281 971.1 697 71.0
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 7.1e-271 937.2 684 70.8
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 4.9e-264 914.4 692 67.3
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 2.1e-262 909.1 486 93.4
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 8.7e-261 903.7 679 67.7
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.3e-256 889.8 692 65.2
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 4.9e-256 887.9 584 78.1
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.1e-255 886.7 687 64.6
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 3.0e-245 852.0 684 64.5
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 9.6e-244 847.0 648 64.8
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 7.7e-225 784.3 636 65.1
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 1.4e-221 773.5 657 61.2
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 6.8e-205 718.0 718 52.2
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 8.3e-203 711.1 682 54.3
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 2.2e-200 703.0 703 53.5
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 2.9e-200 702.6 698 51.7
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 6.5e-200 701.4 720 52.2
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 1.2e-198 697.2 718 50.8
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.7e-195 686.8 712 49.4
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 6.3e-195 684.9 713 50.5
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.6e-193 680.2 713 50.1
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 1.0e-192 677.6 722 51.0
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 6.6e-192 674.9 716 50.1
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 2.5e-191 672.9 683 51.1
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 7.3e-191 671.4 720 50.3
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 3.6e-190 669.1 706 50.8
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 3.0e-189 666.0 706 50.8
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 6.8e-189 664.8 345 98.0
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.2e-188 664.1 709 50.9
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 7.5e-188 661.4 694 51.2
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 2.9e-187 659.4 706 50.7
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 1.4e-186 657.1 711 50.5
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 9.2e-186 654.4 710 49.4
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 2.7e-185 652.9 705 49.8
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 4.6e-185 652.1 679 51.1
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 7.8e-185 651.4 703 50.1
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 3.0e-184 649.4 724 48.6
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 9.5e-183 644.4 664 51.4
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 1.6e-182 643.7 718 48.7
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 2.1e-182 643.3 714 49.7
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.5e-180 637.1 660 50.9
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 4.4e-180 635.6 675 50.8
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 3.7e-179 632.5 700 48.0
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 7.0e-178 628.2 698 47.9
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 9.2e-178 627.9 710 48.6
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.7e-177 626.3 679 50.1
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 3.5e-177 625.9 642 52.0
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 7.8e-177 624.8 714 47.2
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 1.3e-176 624.0 701 48.4
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 3.9e-176 622.5 703 49.6
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 5.0e-176 622.1 698 47.6
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 6.6e-176 621.7 702 48.9
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.5e-172 610.5 660 49.4
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 1.3e-171 607.4 714 45.8
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 1.3e-171 607.4 725 48.1
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 2.9e-171 606.3 705 44.8
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 8.3e-171 604.7 705 44.7
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 2.4e-170 603.2 694 48.0
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 5.4e-170 602.1 703 45.4
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 9.2e-170 601.3 743 45.2
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 2.1e-169 600.1 705 46.1
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 4.3e-167 592.4 702 46.7
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 9.5e-167 591.3 679 47.7
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.1e-166 590.1 705 46.7
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 2.0e-164 583.6 709 46.1
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 2.0e-164 583.6 736 44.4
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 5.8e-164 582.0 745 44.4
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 2.9e-163 579.7 715 44.6
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 5.4e-162 575.5 714 44.7
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 5.4e-162 575.5 659 48.3
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 1.6e-161 573.9 693 45.6
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 1.5e-159 567.4 670 44.9
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 4.0e-157 559.3 704 43.6
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 4.9e-155 552.4 710 46.1
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 1.2e-153 547.7 655 45.0
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 2.1e-150 537.0 758 40.0
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 2.6e-148 530.0 657 44.9
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 2.6e-148 530.0 716 43.0
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 9.9e-148 528.1 705 42.3
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 4.9e-147 525.8 549 53.2
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.1e-146 524.6 732 42.8
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 2.1e-142 510.4 720 39.7
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 7.6e-140 501.9 697 41.3
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 2.3e-136 490.3 679 41.1
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.1e-135 488.0 669 42.3
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 1.6e-129 467.6 670 39.4
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 7.9e-129 465.3 677 40.9
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 9.3e-122 441.8 775 35.9
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 2.8e-118 430.3 776 35.8
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 5.5e-114 416.0 674 36.5
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 2.1e-113 414.1 512 46.7
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.1e-109 401.7 663 37.3
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 1.5e-108 397.9 531 45.4
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 2.2e-107 394.0 530 44.7
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 2.7e-105 387.1 738 35.6
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 3.7e-102 376.7 632 36.1
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 2.7e-97 360.5 777 31.5
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 4.4e-95 353.2 477 42.6
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 5.3e-93 346.3 269 62.5
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 9.1e-93 345.5 387 48.6
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 3.8e-91 340.1 251 63.7
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.3e-88 330.9 479 42.8
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 3.4e-87 327.0 620 34.0
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 3.8e-83 313.5 369 44.4
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.6e-73 281.6 215 62.3
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 2.2e-70 271.2 495 35.6
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 1.2e-63 248.8 258 46.5
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 4.9e-62 243.4 340 42.6
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 7.8e-44 183.0 271 39.9
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.1e-43 180.3 119 66.4
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.7e-22 112.1 124 50.0
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 3.5e-20 104.4 156 41.0
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 1.8e-19 102.1 98 57.1
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.1e-16 91.3 156 39.7
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.5e-15 89.0 159 37.1
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 2.0e-15 88.6 158 39.9
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 8.4e-14 83.2 218 30.7
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 5.5e-13 80.5 130 38.5
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.5e-10 71.6 72 48.6
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 6.9e-08 63.5 74 44.6
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 2.0e-07 62.0 99 35.4


User provided reference genes

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