Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 0.0e+00 1395.2 820 100.0
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 0.0e+00 1212.2 845 85.3
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 0.0e+00 1209.1 823 87.2
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 0.0e+00 1186.0 835 84.6
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 0.0e+00 1177.2 893 80.5
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 6.9e-236 821.2 874 65.4
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 3.3e-230 802.4 862 62.8
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 9.1e-212 741.1 884 59.7
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 4.0e-199 699.1 872 59.1
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.4e-196 689.9 880 57.5
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.0e-178 631.3 864 56.7
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.4e-95 354.4 878 39.0
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 3.8e-93 347.1 859 39.2
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.1e-92 345.5 872 40.6
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 7.2e-92 342.8 886 38.0
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.1e-91 341.3 914 37.5
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 2.7e-91 340.9 858 37.8
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.4e-90 338.6 931 37.6
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 1.8e-87 328.2 858 37.2
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 2.7e-83 314.3 864 37.2
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 4.7e-83 313.5 861 36.8
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 1.2e-81 308.9 858 36.4
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 3.7e-80 303.9 863 36.6
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 1.4e-66 258.8 931 35.4
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.8e-42 178.7 926 28.9
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 3.0e-37 161.4 92 95.7
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.6e-35 155.6 936 27.6
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 3.8e-32 144.4 925 28.4
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.9e-31 142.1 895 26.8
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.1e-30 138.7 874 29.1
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.7e-29 135.6 911 28.4
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 3.9e-29 134.4 867 28.3
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 3.9e-29 134.4 900 29.8
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 5.1e-29 134.0 941 27.6
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.1e-28 132.9 967 26.8
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 4.3e-28 131.0 901 30.2
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 4.3e-28 131.0 933 28.3
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 4.8e-27 127.5 941 26.8
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.8e-26 125.6 466 31.5
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.4e-26 125.2 465 31.6
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.7e-24 119.0 910 26.9
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.9e-24 118.2 904 26.8
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 8.4e-24 116.7 973 29.9
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.4e-23 115.9 918 26.5
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 9.3e-23 113.2 906 26.9
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 2.1e-22 112.1 932 26.1
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 4.6e-22 110.9 906 26.9
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.6e-22 110.9 899 26.3
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.8e-21 109.0 907 26.0
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 2.3e-21 108.6 904 27.9
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 3.0e-21 108.2 859 25.7
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.9e-21 107.8 856 28.0
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 8.7e-21 106.7 817 28.5
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.5e-20 105.9 863 26.2
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 3.3e-20 104.8 937 26.3
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 3.3e-20 104.8 923 27.6
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 9.6e-20 103.2 892 25.2
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.6e-19 102.4 917 26.4
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 4.8e-19 100.9 918 25.2
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 4.8e-19 100.9 522 28.4
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 6.2e-19 100.5 912 26.1
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.1e-18 99.8 508 28.7
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.4e-18 99.4 968 26.7
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 1.8e-18 99.0 916 28.5
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 3.4e-17 94.7 868 25.8
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 5.8e-17 94.0 1013 26.1
BcaC02g09043 Brassica carinata HOM05D004628 ORTHO05D005166 2.9e-16 91.7 111 53.2
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.8e-16 91.3 295 32.9
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 3.8e-16 91.3 267 36.0
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 4.9e-16 90.9 927 25.4
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 4.9e-16 90.9 852 25.8
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 2.5e-15 88.6 908 26.0
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 2.5e-15 88.6 892 25.2
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 3.2e-15 88.2 931 25.0
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 5.5e-15 87.4 889 25.5
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 7.1e-15 87.0 899 24.6
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 2.1e-14 85.5 915 26.1
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 3.5e-14 84.7 202 35.6
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 4.6e-14 84.3 916 24.3
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 6.0e-14 84.0 270 30.7
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 7.9e-14 83.6 250 33.2
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 7.9e-14 83.6 892 26.7
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.8e-13 82.4 950 25.9
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 3.0e-13 81.6 675 24.3
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 6.7e-13 80.5 887 24.2
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.1e-12 79.7 866 25.9
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.9e-12 79.0 494 28.9
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 1.9e-12 79.0 851 25.3
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.9e-12 79.0 451 26.2
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.9e-12 79.0 866 26.0
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 4.3e-12 77.8 940 25.4
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 4.3e-12 77.8 891 24.8
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 5.7e-12 77.4 281 33.1
BcaC06g34943 Brassica carinata HOM05D016487 ORTHO05D023985 7.4e-12 77.0 50 78.0
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.1e-10 73.2 520 24.6
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.4e-10 72.8 906 25.3
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 1.8e-10 72.4 939 26.8
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 3.1e-10 71.6 931 26.1
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 5.3e-10 70.9 888 24.1
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.0e-10 70.1 857 24.6
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 7.6e-09 67.0 851 24.9
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 7.6e-09 67.0 877 26.5
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 1.3e-08 66.2 842 25.3
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.3e-08 66.2 921 25.0
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.2e-08 65.5 989 22.9
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.2e-08 65.5 825 25.1
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 2.2e-08 65.5 149 36.2
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 2.9e-08 65.1 237 30.4
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.9e-08 65.1 116 37.9
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 5.0e-08 64.3 131 42.0
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 8.4e-08 63.5 895 26.6
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 8.4e-08 63.5 146 35.6
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 1.1e-07 63.2 149 34.9
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.4e-07 62.8 235 29.4
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.4e-07 62.8 947 25.4
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 2.5e-07 62.0 832 24.9
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 2.5e-07 62.0 869 23.2
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 4.2e-07 61.2 225 28.0
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 5.5e-07 60.8 225 29.8
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 5.5e-07 60.8 87 43.7
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 9.3e-07 60.1 191 29.3
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 1.2e-06 59.7 214 28.0
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 2.1e-06 58.9 156 40.4
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.1e-06 58.9 130 36.2
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.7e-06 58.5 939 23.6
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.7e-06 58.5 93 39.8
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.7e-06 58.5 66 65.2
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 3.5e-06 58.2 584 24.7
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 6.1e-06 57.4 173 33.5


User provided reference genes

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