Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 5.9e-172 607.4 309 100.0
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 8.5e-171 603.6 309 99.4
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 9.4e-170 600.1 309 98.7
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.4e-168 596.3 309 97.4
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 5.7e-167 590.9 309 97.1
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 4.8e-166 587.8 309 96.4
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 4.4e-159 564.7 313 92.7
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 2.0e-156 555.8 313 90.7
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 1.2e-153 546.6 314 88.2
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 2.8e-153 545.4 313 88.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 4.0e-152 541.6 314 87.6
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 2.4e-149 532.3 314 87.3
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 3.9e-147 525.0 309 86.4
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.5e-146 523.1 310 84.2
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.1e-144 515.4 312 85.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 3.1e-144 515.4 312 85.3
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.4e-141 506.5 311 84.6
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 7.1e-141 504.2 313 82.7
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 4.3e-130 468.4 269 83.3
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 5.6e-130 468.0 309 76.7
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 7.3e-130 467.6 269 82.9
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.6e-129 466.5 265 83.4
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.6e-129 466.5 270 83.3
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.8e-129 465.7 318 76.4
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.6e-129 465.3 270 83.0
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.8e-128 463.0 312 74.7
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.8e-128 463.0 318 75.5
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 3.1e-128 462.2 277 81.2
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 5.2e-128 461.5 305 74.8
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 6.8e-128 461.1 282 80.1
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 6.8e-128 461.1 315 74.6
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.5e-127 459.9 270 82.6
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 2.0e-127 459.5 290 78.6
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.0e-127 459.5 270 81.9
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 5.8e-127 458.0 277 80.9
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 7.6e-127 457.6 307 75.2
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 9.9e-127 457.2 269 80.7
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 1.7e-126 456.4 296 76.4
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.9e-125 453.0 313 72.8
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.4e-125 452.6 277 81.2
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 3.2e-125 452.2 262 82.8
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 3.2e-125 452.2 270 80.0
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 1.6e-124 449.9 309 72.5
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.6e-124 449.9 255 82.4
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 6.0e-124 448.0 295 74.2
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 7.8e-124 447.6 298 75.8
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 7.8e-124 447.6 269 79.2
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 7.8e-124 447.6 261 82.4
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.3e-123 446.8 254 83.5
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.3e-123 446.8 315 71.7
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.0e-123 445.7 294 75.5
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 3.9e-123 445.3 295 75.3
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.9e-123 445.3 308 74.0
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 3.9e-123 445.3 254 82.3
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 6.6e-123 444.5 267 79.4
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 8.7e-123 444.1 295 74.9
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.5e-122 443.4 306 72.9
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 3.3e-122 442.2 263 81.4
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.3e-122 442.2 261 81.2
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 3.3e-122 442.2 255 81.2
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 3.3e-122 442.2 281 76.5
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 4.3e-122 441.8 308 73.1
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 7.3e-122 441.0 297 73.1
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 7.3e-122 441.0 270 78.9
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 9.6e-122 440.7 262 81.3
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.3e-121 440.3 319 71.5
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.3e-121 440.3 281 75.1
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.6e-121 439.9 261 78.9
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.6e-121 439.9 270 80.4
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 2.8e-121 439.1 286 75.9
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 2.8e-121 439.1 289 74.4
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.6e-121 438.7 262 79.4
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 4.8e-121 438.3 304 72.4
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 4.8e-121 438.3 282 75.2
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 8.1e-121 437.6 286 75.2
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.4e-120 436.8 306 72.5
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 3.1e-120 435.6 300 73.7
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 9.0e-120 434.1 275 75.6
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 2.0e-119 433.0 251 80.9
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 9.9e-119 430.6 306 71.2
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.3e-118 430.3 305 71.5
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 1.7e-118 429.9 305 71.5
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 4.9e-118 428.3 275 75.3
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 4.9e-118 428.3 301 71.4
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.1e-117 427.2 292 71.9
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 1.1e-117 427.2 291 73.2
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 1.9e-117 426.4 243 81.1
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 1.9e-117 426.4 243 81.1
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 2.4e-117 426.0 280 72.5
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.6e-116 423.3 302 70.5
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 4.6e-116 421.8 305 67.9
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 4.6e-116 421.8 243 80.2
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 5.1e-115 418.3 243 81.1
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 6.9e-112 407.9 252 78.2
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.2e-110 402.9 261 75.5
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.2e-103 380.6 269 68.8
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 5.8e-103 378.3 303 66.7
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 2.2e-102 376.3 219 82.2
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.3e-97 360.5 259 66.4
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 3.7e-97 359.0 281 61.2
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 4.8e-97 358.6 279 63.8
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 8.2e-97 357.8 264 72.0
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.3e-94 350.5 300 60.3
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.6e-92 343.6 270 68.1
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.1e-90 337.4 272 60.7
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.5e-90 337.0 199 82.4
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 2.8e-89 332.8 192 83.9
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 3.1e-88 329.3 263 61.2
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 4.1e-88 328.9 192 80.2
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 2.0e-87 326.6 192 79.7
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.3e-86 323.9 190 82.1
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 9.4e-85 317.8 190 80.0
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.6e-84 317.0 224 71.0
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 6.7e-83 311.6 268 59.3
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.3e-82 308.9 173 83.2
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.2e-79 300.8 243 58.0
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 2.6e-79 299.7 187 78.6
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 2.6e-71 273.1 210 67.1
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.7e-65 253.8 256 52.7
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 7.5e-58 228.4 256 52.3
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.7e-57 227.3 188 62.2
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 2.8e-57 226.5 173 67.6
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 7.3e-37 158.7 132 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.2e-33 147.1 274 36.9
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 4.9e-33 146.0 82 79.3
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 6.0e-23 112.5 325 29.8
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 8.1e-20 102.1 71 66.2
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 5.2e-19 99.4 300 30.0
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 9.9e-18 95.1 65 70.8
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 3.8e-17 93.2 82 79.3
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.5e-13 80.5 74 59.5
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 2.1e-12 77.4 104 51.0


User provided reference genes

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