Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25452 Brassica carinata HOM05D006672 ORTHO05D007769 2.1e-80 302.4 163 100.0
C05p13360 Brassica napus HOM05D006672 ORTHO05D007769 2.1e-80 302.4 163 100.0
BolC5t30073H Brassica oleracea HOM05D006672 ORTHO05D007769 3.8e-77 291.6 165 97.0
A06p11230 Brassica napus HOM05D006672 ORTHO05D007769 1.5e-70 269.6 163 87.7
BraA06t24303Z Brassica rapa HOM05D006672 ORTHO05D007769 2.2e-69 265.8 163 85.9
Thhalv10008936m.g Eutrema salsugineum HOM05D006672 ORTHO05D007769 1.5e-65 253.1 169 86.4
BcaC05g25464 Brassica carinata HOM05D006672 ORTHO05D007769 4.1e-63 245.0 164 84.1
Sp1g13550 Schrenkiella parvula HOM05D006672 ORTHO05D007769 1.2e-59 233.4 169 75.7
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 4.8e-56 221.5 166 75.9
BcaC05g25462 Brassica carinata HOM05D006672 ORTHO05D007769 8.2e-56 220.7 164 80.5
CARHR015760 Cardamine hirsuta HOM05D006672 ORTHO05D007769 1.8e-55 219.5 164 79.3
Carub.0001s1499 Capsella rubella HOM05D006672 ORTHO05D007769 7.2e-52 207.6 168 75.0
AL1G27320 Arabidopsis lyrata HOM05D006672 ORTHO05D007769 2.7e-51 205.7 168 69.0
AT1G15230 Arabidopsis thaliana HOM05D006672 ORTHO05D007769 3.3e-49 198.7 168 68.5
THA.LOC104800426 Tarenaya hassleriana HOM05D006672 ORTHO05D007769 1.7e-37 159.8 172 57.6
Gohir.D05G130600 Gossypium hirsutum HOM05D006672 ORTHO05D007769 3.6e-27 125.6 185 51.9
Glyma.08G205200 Glycine max HOM05D006672 ORTHO05D007769 8.0e-27 124.4 181 48.1
Gorai.009G134300 Gossypium raimondii HOM05D006672 ORTHO05D007769 1.0e-26 124.0 185 51.4
Gohir.A05G131200 Gossypium hirsutum HOM05D006672 ORTHO05D007769 4.0e-26 122.1 185 51.9
Aa31LG7G40 Aethionema arabicum HOM05D006672 ORTHO05D007769 4.4e-25 118.6 154 53.2
Potri.003G053500 Populus trichocarpa HOM05D006672 ORTHO05D007769 4.4e-25 118.6 179 45.8
TWI12G1441 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 1.3e-24 117.1 178 44.4
TWI75G0771 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 6.3e-24 114.8 176 44.3
Phvul.010G149100 Phaseolus vulgaris HOM05D006672 ORTHO05D007769 2.4e-23 112.8 183 41.0
Thecc.06G091100 Theobroma cacao HOM05D006672 ORTHO05D007769 3.2e-23 112.5 184 45.7
COL.COLO4_30405 Corchorus olitorius HOM05D006672 ORTHO05D007769 1.2e-22 110.5 179 45.8
FAN14G5379 Fragaria x ananassa HOM05D006672 ORTHO05D007769 3.5e-22 109.0 171 45.0
VMungo0331G0342 Vigna mungo HOM05D006672 ORTHO05D007769 1.0e-21 107.5 184 41.3
Ah.01g021520 Amaranthus hybridus HOM05D006672 ORTHO05D007769 1.3e-21 107.1 186 45.2
Cfa009362 Carpinus fangiana HOM05D006672 ORTHO05D007769 1.7e-21 106.7 187 45.5
FvH4_6g31600 Fragaria vesca HOM05D006672 ORTHO05D007769 2.9e-21 105.9 175 44.6
RcHm_v2.0_Chr2g0138661 Rosa chinensis HOM05D006672 ORTHO05D007769 6.6e-21 104.8 170 47.1
Actinidia24746 Actinidia chinensis HOM05D006672 ORTHO05D007769 1.1e-20 104.0 170 48.8
FAN05G5736 Fragaria x ananassa HOM05D006672 ORTHO05D007769 1.9e-20 103.2 173 45.1
QL05p022164 Quercus lobata HOM05D006672 ORTHO05D007769 4.3e-20 102.1 192 39.6
CiPaw.02G149600 Carya illinoinensis HOM05D006672 ORTHO05D007769 5.6e-20 101.7 184 43.5
Atru.chr1.3318 Acer truncatum HOM05D006672 ORTHO05D007769 2.1e-19 99.8 173 48.0
FAN09G1670 Fragaria x ananassa HOM05D006672 ORTHO05D007769 2.8e-19 99.4 171 43.3
Actinidia08988 Actinidia chinensis HOM05D000726 ORTHO05D007769 1.4e-18 97.1 155 45.2
Ciclev10026595m.g Citrus clementina HOM05D006672 ORTHO05D007769 1.8e-18 96.7 191 39.8
Lj3g0012066 Lotus japonicus HOM05D006672 ORTHO05D007769 2.3e-18 96.3 184 39.7
EL10Ac9g22019 Beta vulgaris HOM05D000202 ORTHO05D000117 3.1e-18 95.9 172 42.4
arahy.Tifrunner.gnm1.ann1.ZTP7X5 Arachis hypogaea HOM05D006672 ORTHO05D007769 6.8e-18 94.7 117 50.4
Haze_12408 Corylus avellana HOM05D006672 ORTHO05D007769 1.2e-17 94.0 167 43.7
arahy.Tifrunner.gnm1.ann1.HW7XL7 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.6e-17 92.8 125 49.6
Dinv30493 Davidia involucrata HOM05D006672 ORTHO05D007769 3.4e-17 92.4 169 43.8
Prupe.3G068600 Prunus persica HOM05D006672 ORTHO05D007769 4.4e-17 92.0 178 41.6
Rhsim12G0199700 Rhododendron simsii HOM05D006672 ORTHO05D007769 4.4e-17 92.0 175 41.7
Cc04_g03140 Coffea canephora HOM05D006672 ORTHO05D007769 5.8e-17 91.7 190 41.6
Sopen03g039560 Solanum pennellii HOM05D006672 ORTHO05D007769 9.8e-17 90.9 183 40.4
Lalb_Chr25g0279941 Lupinus albus HOM05D006672 ORTHO05D007769 1.3e-16 90.5 163 47.2
Nitab4.5_0001315g0240 Nicotiana tabacum HOM05D006672 ORTHO05D007769 1.3e-16 90.5 183 37.7
Manes.04G128475 Manihot esculenta HOM05D006672 ORTHO05D007769 1.7e-16 90.1 181 40.9
Duzib160G0370 Durio zibethinus HOM05D000726 ORTHO05D007769 2.2e-16 89.7 147 46.3
Nitab4.5_0008314g0010 Nicotiana tabacum HOM05D006672 ORTHO05D007769 2.9e-16 89.4 186 41.4
AUR62011637 Chenopodium quinoa HOM05D006672 ORTHO05D007769 3.7e-16 89.0 137 46.0
Solyc03g120740.1 Solanum lycopersicum HOM05D006672 ORTHO05D007769 6.4e-16 88.2 183 41.0
arahy.Tifrunner.gnm1.ann1.N61AC9 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.1e-15 87.4 125 48.8
Migut.D01021 Erythranthe guttata HOM05D006672 ORTHO05D007769 1.4e-15 87.0 181 39.2
arahy.Tifrunner.gnm1.ann1.07RGV5 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.4e-15 86.3 183 38.8
HanXRQChr10g0313401 Helianthus annuus HOM05D006672 ORTHO05D007769 2.4e-15 86.3 175 42.9
Oeu040367.1 Olea europaea HOM05D006672 ORTHO05D007769 2.4e-15 86.3 173 38.7
AUR62016468 Chenopodium quinoa HOM05D006672 ORTHO05D007769 4.1e-15 85.5 142 43.0
Duzib235G0275 Durio zibethinus HOM05D006672 ORTHO05D007769 4.1e-15 85.5 91 58.2
TPR.G17666 Trifolium pratense HOM05D006672 ORTHO05D007769 4.1e-15 85.5 164 40.2
arahy.Tifrunner.gnm1.ann1.C7681Z Arachis hypogaea HOM05D006672 ORTHO05D007769 5.4e-15 85.1 125 48.0
Sabra03G0029900 Salix brachista HOM05D006672 ORTHO05D007769 5.4e-15 85.1 145 44.8
arahy.Tifrunner.gnm1.ann1.MVJ1PZ Arachis hypogaea HOM05D006672 ORTHO05D007769 2.7e-14 82.8 173 37.6
CANSAT56G0062 Cannabis sativa HOM05D006672 ORTHO05D007769 3.5e-14 82.4 172 38.4
arahy.Tifrunner.gnm1.ann1.HQ5KA8 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.0e-13 80.9 104 50.0
DCAR_026329 Daucus carota HOM05D006672 ORTHO05D007769 1.0e-13 80.9 166 42.2
Hma1.2p1_2022F.1_g311340 Hydrangea macrophylla HOM05D006672 ORTHO05D007769 1.3e-13 80.5 162 42.6
arahy.Tifrunner.gnm1.ann1.K72DJ3 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.7e-13 80.1 91 54.9
MD17G1192500 Malus domestica HOM05D006672 ORTHO05D007769 1.7e-13 80.1 167 44.9
CSS0000508 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 2.3e-13 79.7 143 42.7
Ca_20375_v3 Cicer arietinum L. HOM05D006672 ORTHO05D007769 2.3e-13 79.7 71 57.7
PGSC0003DMG400040414 Solanum tuberosum HOM05D006672 ORTHO05D007769 2.3e-13 79.7 186 38.7
arahy.Tifrunner.gnm1.ann1.QF27IC Arachis hypogaea HOM05D006672 ORTHO05D007769 3.0e-13 79.3 117 45.3
MBI04_g22016_MAGBIO Magnolia biondii HOM05D006672 ORTHO05D007769 3.9e-13 79.0 182 36.8
Psat7g250280 Pisum sativum HOM05D006672 ORTHO05D007769 3.9e-13 79.0 163 39.3
SGA_v2.0_scaffold4G02004 Striga asiatica HOM05D006672 ORTHO05D007769 3.9e-13 79.0 174 40.8
SalBow1G8254 Salvia bowleyana HOM05D000380 ORTHO05D000561 5.0e-13 78.6 165 39.4
TAR636G2852 Trochodendron aralioides HOM05D006672 ORTHO05D007769 8.6e-13 77.8 184 39.7
ECA234G2073 Erigeron canadensis HOM05D006672 ORTHO05D007769 1.5e-12 77.0 156 42.3
ClCG07G013120 Citrullus lanatus HOM05D006672 ORTHO05D007769 4.3e-12 75.5 168 39.3
Lsat_1_v5_gn_2_34400 Lactuca sativa HOM05D008424 ORTHO05D007769 4.3e-12 75.5 176 36.9
Sed0005168 Sechium edule HOM05D006672 ORTHO05D007769 4.3e-12 75.5 170 38.2
vmacro16964 Vaccinium macrocarpon HOM05D006672 ORTHO05D007769 1.6e-11 73.6 190 36.3
MELO3C012968.2 Cucumis melo HOM05D006672 ORTHO05D007769 3.6e-11 72.4 159 42.8
DCAR_022631 Daucus carota HOM05D006672 ORTHO05D007769 3.6e-11 72.4 147 40.8
Medtr0206s0010 Medicago truncatula HOM05D006672 ORTHO05D007769 3.6e-11 72.4 110 42.7
MSTRG.22671 Avicennia marina HOM05D006672 ORTHO05D007769 4.7e-11 72.0 157 38.9
Lsat_1_v5_gn_5_130760 Lactuca sativa HOM05D006672 ORTHO05D007769 4.7e-11 72.0 107 48.6
Lsat_1_v5_gn_5_130661 Lactuca sativa HOM05D006672 ORTHO05D007769 6.2e-11 71.6 150 38.0
Medtr4g012950 Medicago truncatula HOM05D006672 ORTHO05D007769 1.1e-10 70.9 161 39.8
Aqoxy7G01641 Aquilegia oxysepala HOM05D006672 ORTHO05D007769 2.3e-10 69.7 184 33.7
unitig_899.g14774 Utricularia gibba HOM05D006672 ORTHO05D007769 2.3e-10 69.7 172 35.5
Peaxi162Scf00015g00013 Petunia axillaris HOM05D006672 ORTHO05D007769 4.0e-10 68.9 59 61.0
Rhsim06G0080600 Rhododendron simsii HOM05D006672 ORTHO05D007769 8.9e-10 67.8 73 54.8
Zm00001eb098380 Zea mays HOM05D006672 ORTHO05D007769 2.0e-09 66.6 94 48.9
arahy.Tifrunner.gnm1.ann1.XTGM9Z Arachis hypogaea HOM05D006672 ORTHO05D007769 7.5e-09 64.7 112 42.9
CsaV3_3G025030 Cucumis sativus L. HOM05D006672 ORTHO05D007769 7.5e-09 64.7 154 38.3
PGR102G0682 Punica granatum HOM05D006672 ORTHO05D007769 9.8e-09 64.3 98 43.9
ATR0829G196 Amborella trichopoda HOM05D006672 ORTHO05D007769 1.7e-08 63.5 134 35.8
Lsat_1_v5_gn_5_130640 Lactuca sativa HOM05D006672 ORTHO05D007769 2.2e-08 63.2 65 60.0
PSO782G0352 Papaver somniferum HOM05D006672 ORTHO05D007769 3.2e-07 59.3 152 36.8
arahy.Tifrunner.gnm1.ann1.DAY3RM Arachis hypogaea HOM05D006672 ORTHO05D007769 4.1e-07 58.9 124 39.5
PSO832G0654 Papaver somniferum HOM05D006672 ORTHO05D007769 4.1e-07 58.9 152 38.2
Pp3c1_40010 Physcomitrium patens HOM05D006672 ORTHO05D007769 4.1e-07 58.9 67 50.7
CSS0037944 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 5.4e-07 58.5 144 38.2
Nn8g39154 Nelumbo nucifera HOM05D006672 ORTHO05D007769 9.2e-07 57.8 171 33.3
HPP92_005483 Vanilla planifolia HOM05D006672 ORTHO05D007769 1.2e-06 57.4 142 34.5
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 1.6e-06 57.0 169 30.2
SMO364G0119 Selaginella moellendorffii HOM05D006672 ORTHO05D007769 1.6e-06 57.0 139 34.5
Sc15g0001280 Simmondsia chinensis HOM05D006672 ORTHO05D007769 1.6e-06 57.0 179 30.2


User provided reference genes

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