Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p11460 Brassica napus HOM05D003025 ORTHO05D003305 5.9e-158 560.8 285 100.0
BcaC05g25272 Brassica carinata HOM05D003025 ORTHO05D003305 6.1e-139 497.7 276 93.5
BcaB02g06463 Brassica carinata HOM05D003025 ORTHO05D003305 4.7e-123 444.9 289 81.3
BraA06t24164Z Brassica rapa HOM05D003025 ORTHO05D003305 2.1e-115 419.5 245 90.6
A06p09750 Brassica napus HOM05D003025 ORTHO05D003305 3.0e-114 415.6 245 89.4
Carub.0001s1338 Capsella rubella HOM05D003025 ORTHO05D003305 3.1e-66 256.1 277 56.3
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 1.6e-38 164.1 331 39.9
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 1.6e-38 164.1 303 43.9
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 1.6e-38 164.1 303 43.9
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 2.7e-38 163.3 295 44.4
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 3.6e-38 162.9 325 37.8
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 1.0e-37 161.4 325 40.9
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 2.0e-36 157.1 323 39.0
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 3.3e-36 156.4 312 39.7
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 1.5e-33 147.5 359 37.6
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 1.3e-32 144.4 366 37.2
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 3.8e-32 142.9 337 37.7
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 6.5e-32 142.1 359 37.3
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 7.2e-31 138.7 353 36.3
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 7.2e-31 138.7 359 35.4
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 1.2e-30 137.9 289 37.7
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 3.6e-30 136.3 293 38.6
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.4e-29 134.4 281 42.0
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 4.1e-26 122.9 395 32.4
Thhalv10008913m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 3.5e-25 119.8 173 47.4
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 3.2e-23 113.2 426 30.8
A09p24740 Brassica napus HOM05D003025 ORTHO05D003305 2.6e-20 103.6 249 38.6
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 8.2e-19 98.6 385 29.4
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.1e-18 98.2 310 31.6
AT1G13650 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 1.4e-18 97.8 207 41.5
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 2.4e-18 97.1 315 30.8
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 2.4e-18 97.1 350 28.3
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 2.4e-18 97.1 299 31.4
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.6e-17 94.4 299 31.8
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 2.0e-17 94.0 285 30.9
HanXRQChr16g0528681 Helianthus annuus HOM05D003025 ORTHO05D003305 2.0e-17 94.0 304 32.6
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 3.5e-17 93.2 375 27.2
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 1.0e-16 91.7 361 29.1
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 1.3e-16 91.3 383 27.2
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 2.2e-16 90.5 82 59.8
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 2.9e-16 90.1 397 27.5
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 3.8e-16 89.7 110 52.7
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 3.8e-16 89.7 224 35.3
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 6.5e-16 89.0 397 26.7
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 8.5e-16 88.6 393 26.7
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 8.5e-16 88.6 403 27.5
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 1.1e-15 88.2 79 62.0
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 1.5e-15 87.8 86 59.3
SGA_v2.0_scaffold16G07826 Striga asiatica HOM05D003025 ORTHO05D003305 1.5e-15 87.8 76 57.9
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 1.5e-15 87.8 421 26.8
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 1.9e-15 87.4 85 57.6
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.9e-15 87.4 80 56.2
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 1.9e-15 87.4 356 27.5
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 1.9e-15 87.4 79 62.0
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 1.9e-15 87.4 79 62.0
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 5.5e-15 85.9 354 28.2
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 5.5e-15 85.9 325 30.5
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 7.2e-15 85.5 404 28.0
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 7.2e-15 85.5 335 27.2
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.6e-14 84.3 385 25.7
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.6e-14 84.3 332 28.9
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.1e-14 84.0 407 27.3
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 2.7e-14 83.6 315 29.8
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 3.6e-14 83.2 357 28.9
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 3.6e-14 83.2 199 36.7
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 4.7e-14 82.8 391 28.6
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 8.0e-14 82.0 83 57.8
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 8.0e-14 82.0 338 26.3
MSTRG.13475 Avicennia marina HOM05D003025 ORTHO05D003305 1.0e-13 81.6 82 53.7
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 1.0e-13 81.6 403 28.5
vmacro01298 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 1.0e-13 81.6 79 58.2
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 1.4e-13 81.3 350 28.6
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.4e-13 81.3 409 27.1
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 1.8e-13 80.9 354 27.4
Lalb_Chr04g0255461 Lupinus albus HOM05D003025 ORTHO05D003305 1.8e-13 80.9 85 51.8
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 1.8e-13 80.9 82 61.0
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 2.3e-13 80.5 332 27.4
SGA_v2.0_scaffold287G47189 Striga asiatica HOM05D003025 ORTHO05D003305 2.3e-13 80.5 257 31.5
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 3.0e-13 80.1 244 30.3
Lalb_Chr10g0099151 Lupinus albus HOM05D003025 ORTHO05D003305 3.0e-13 80.1 112 42.9
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 3.0e-13 80.1 314 28.3
Nitab4.5_0002491g0030 Nicotiana tabacum HOM05D003025 ORTHO05D003305 4.0e-13 79.7 96 53.1
MSTRG.7727 Avicennia marina HOM05D003025 ORTHO05D003305 5.2e-13 79.3 147 39.5
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 5.2e-13 79.3 324 29.3
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 6.8e-13 79.0 405 27.2
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 6.8e-13 79.0 82 56.1
unitig_52.g17161 Utricularia gibba HOM05D003025 ORTHO05D003305 6.8e-13 79.0 84 54.8
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 8.8e-13 78.6 383 29.2
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 1.2e-12 78.2 67 58.2
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 1.2e-12 78.2 313 29.7
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 1.5e-12 77.8 82 57.3
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.5e-12 77.8 168 39.3
Sc04g0007330 Simmondsia chinensis HOM05D003025 ORTHO05D003305 1.5e-12 77.8 69 58.0
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 1.5e-12 77.8 351 27.6
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 2.0e-12 77.4 83 57.8
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 2.0e-12 77.4 267 32.6
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 2.6e-12 77.0 82 52.4
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 2.6e-12 77.0 82 52.4
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 2.6e-12 77.0 351 26.8
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 2.6e-12 77.0 371 25.9
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 2.6e-12 77.0 79 53.2
Phvul.003G280500 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 3.4e-12 76.6 308 27.9
Lalb_Chr17g0341461 Lupinus albus HOM05D003025 ORTHO05D003305 5.7e-12 75.9 113 44.2
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 7.5e-12 75.5 386 26.7
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 7.5e-12 75.5 85 52.9
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 9.7e-12 75.1 377 25.2
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 1.3e-11 74.7 329 27.1
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 2.8e-11 73.6 82 51.2
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 2.8e-11 73.6 76 50.0
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 2.8e-11 73.6 367 27.0
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 2.8e-11 73.6 83 53.0
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 3.7e-11 73.2 100 46.0
unitig_62.g23701 Utricularia gibba HOM05D003025 ORTHO05D003305 4.8e-11 72.8 87 51.7
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 6.3e-11 72.4 337 27.9
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 6.3e-11 72.4 345 26.7
CDE10G0152 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 8.3e-11 72.0 74 52.7
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 1.1e-10 71.6 242 29.8
Migut.E00253 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.4e-10 71.2 283 30.4
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 1.8e-10 70.9 131 42.0
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 1.8e-10 70.9 316 27.8
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 1.8e-10 70.9 313 29.4
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 3.1e-10 70.1 82 47.6
HPP92_015551 Vanilla planifolia HOM05D003025 ORTHO05D003305 3.1e-10 70.1 107 41.1
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 5.3e-10 69.3 82 47.6
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 5.3e-10 69.3 84 47.6
BraA09t38060Z Brassica rapa HOM05D003025 ORTHO05D003305 9.1e-10 68.6 233 31.8
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 9.1e-10 68.6 82 50.0
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 9.1e-10 68.6 330 26.1
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 1.2e-09 68.2 319 25.7
Oeu021806.1 Olea europaea HOM05D003025 ORTHO05D003305 1.2e-09 68.2 415 23.9
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 1.6e-09 67.8 111 43.2
unitig_22.g5562 Utricularia gibba HOM05D003025 ORTHO05D003305 2.0e-09 67.4 146 33.6
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 3.5e-09 66.6 85 49.4
Sopen05g006590 Solanum pennellii HOM05D003025 ORTHO05D003305 3.5e-09 66.6 375 26.1
AL1G25440 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 4.5e-09 66.2 142 39.4
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 5.9e-09 65.9 340 25.6
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 5.9e-09 65.9 103 43.7
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 1.0e-08 65.1 81 49.4
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 1.0e-08 65.1 274 29.2
Hund09959 Selenicereus undatus HOM05D003025 ORTHO05D003305 1.0e-08 65.1 81 45.7
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 1.0e-08 65.1 64 56.2
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 1.3e-08 64.7 227 29.1
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 1.3e-08 64.7 235 30.6
GSVIVG01008155001 Vitis vinifera HOM05D003025 ORTHO05D003305 1.3e-08 64.7 66 50.0
CDE05G3645 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 1.7e-08 64.3 86 44.2
CDE10G0686 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 1.7e-08 64.3 167 30.5
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 1.7e-08 64.3 55 54.5
Zm00001eb080280 Zea mays HOM05D041475 ORTHO05D003305 1.7e-08 64.3 55 54.5
ECA234G4845 Erigeron canadensis HOM05D003025 ORTHO05D003305 2.2e-08 63.9 307 26.4
CDE02G2647 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 2.9e-08 63.5 86 43.0
unitig_8.g3969 Utricularia gibba HOM05D003025 ORTHO05D003305 3.8e-08 63.2 156 32.7
EL10Ac6g14672 Beta vulgaris HOM05D003025 ORTHO05D003305 5.0e-08 62.8 230 30.9
unitig_21.g20865 Utricularia gibba HOM05D001307 ORTHO05D001158 5.0e-08 62.8 153 34.0
Zm00001eb245390 Zea mays HOM05D003025 ORTHO05D003305 6.5e-08 62.4 53 58.5
BolC2t11264H Brassica oleracea HOM05D003025 ORTHO05D003305 8.5e-08 62.0 138 39.9
Lsat_1_v5_gn_3_105000 Lactuca sativa HOM05D003025 ORTHO05D003305 1.1e-07 61.6 275 28.0
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 1.5e-07 61.2 63 52.4
FAN13G2721 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.9e-07 60.8 64 46.9
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 1.9e-07 60.8 325 25.8
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 2.5e-07 60.5 67 49.3
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 2.5e-07 60.5 102 38.2
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 3.2e-07 60.1 202 31.2
MD14G1216700 Malus domestica HOM05D003025 ORTHO05D003305 3.2e-07 60.1 249 28.5
SEGI_24332 Sequoiadendron giganteum HOM05D066507 ORTHO05D003305 3.2e-07 60.1 91 45.1
Gorai.001G067100 Gossypium raimondii HOM05D003025 ORTHO05D003305 5.5e-07 59.3 70 47.1
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 5.5e-07 59.3 85 47.1
Gohir.A07G058700 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.4e-07 58.5 62 50.0
Gohir.D07G063600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.4e-07 58.5 62 50.0
Sc11g0002650 Simmondsia chinensis HOM05D003025 ORTHO05D003305 9.4e-07 58.5 286 27.3
Os02g0582100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 1.2e-06 58.2 185 29.7
FAN18G0971 Fragaria x ananassa HOM05D003025 ORTHO05D003305 2.1e-06 57.4 64 45.3
FvH4_5g13400 Fragaria vesca HOM05D003025 ORTHO05D003305 4.7e-06 56.2 64 45.3
Duzib205G1035 Durio zibethinus HOM05D003025 ORTHO05D003305 6.1e-06 55.8 181 31.5
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 6.1e-06 55.8 280 26.8
SEGI_14421 Sequoiadendron giganteum HOM05D003025 ORTHO05D003305 8.0e-06 55.5 37 73.0


User provided reference genes

Program Settings