Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 1.6e-81 306.2 170 100.0
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 2.8e-46 189.1 313 46.3
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.1e-45 185.7 314 46.2
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 4.7e-38 161.8 338 40.5
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 8.9e-37 157.5 309 43.7
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.2e-36 157.1 309 43.7
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 9.8e-36 154.1 351 38.7
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.2e-33 147.1 105 83.8
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 8.1e-30 134.4 317 39.1
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.8e-29 133.3 336 36.0
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 4.4e-28 128.6 322 39.8
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-27 127.1 324 39.8
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 2.2e-27 126.3 348 35.1
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.9e-26 123.2 349 35.8
BcaC05g25071 Brassica carinata HOM05D004847 ORTHO05D005856 1.5e-23 113.6 71 88.7
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 4.0e-21 105.5 349 32.4
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 2.7e-17 92.8 80 72.5
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 4.3e-15 85.5 107 51.4
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.6e-14 83.6 293 33.8
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.8e-13 80.1 179 42.5
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.6e-12 76.3 226 36.7
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 9.9e-12 74.3 235 36.2
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 8.4e-11 71.2 240 37.5
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.9e-10 70.1 233 34.3
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.9e-10 70.1 233 34.3
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 4.2e-10 68.9 237 34.2
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-10 68.9 233 33.9
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 5.4e-10 68.6 243 35.0
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 7.1e-10 68.2 236 33.9
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.6e-09 67.0 236 34.3
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 3.5e-09 65.9 237 30.8
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 4.6e-09 65.5 237 34.6
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 7.9e-09 64.7 236 32.6
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.0e-08 64.3 235 32.3
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.0e-08 64.3 234 33.8
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 1.8e-08 63.5 238 35.7
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.9e-08 62.4 233 33.5
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.7e-08 61.6 233 33.0
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 8.7e-08 61.2 234 31.6
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.1e-07 60.8 236 32.2
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.9e-07 60.1 233 33.9
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.9e-07 60.1 237 34.2
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 3.3e-07 59.3 251 33.9
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 3.3e-07 59.3 241 33.2
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 5.6e-07 58.5 236 32.2
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 7.4e-07 58.2 233 32.2
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 7.4e-07 58.2 223 31.4
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 7.4e-07 58.2 240 34.6
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 7.4e-07 58.2 235 32.8
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.3e-06 57.4 263 31.6
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.3e-06 57.4 246 33.3
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.6e-06 57.0 102 45.1
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.6e-06 57.0 245 33.5
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 2.1e-06 56.6 237 33.8
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 3.7e-06 55.8 228 30.3
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.7e-06 55.8 246 32.9
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 3.7e-06 55.8 233 33.9
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 4.8e-06 55.5 218 35.8
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 6.2e-06 55.1 253 31.6
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 8.1e-06 54.7 246 30.1


User provided reference genes

Program Settings