Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 1.4e-34 149.1 74 100.0
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 5.2e-34 147.1 74 98.6
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 7.6e-33 143.3 74 95.9
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 8.7e-29 129.8 74 86.5
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 7.3e-28 126.7 71 85.9
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 9.6e-28 126.3 74 86.5
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 1.6e-27 125.6 74 85.1
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 4.8e-27 124.0 73 83.6
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 1.1e-23 112.8 73 76.7
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 7.1e-23 110.2 75 72.0
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 1.2e-17 92.8 75 66.7
AT1G62045 Arabidopsis thaliana HOM05D007037 ORTHO05D006691 3.8e-16 87.8 72 63.9
Carub.0002s0297 Capsella rubella HOM05D007037 ORTHO05D006691 8.4e-16 86.7 72 63.9
AL2G13860 Arabidopsis lyrata HOM05D007037 ORTHO05D006691 1.1e-15 86.3 72 63.9
BcaB07g31300 Brassica carinata HOM05D007037 ORTHO05D006691 1.0e-13 79.7 73 61.6
A09p16540 Brassica napus HOM05D007037 ORTHO05D006691 3.0e-13 78.2 73 60.3
BraA09t37292Z Brassica rapa HOM05D007037 ORTHO05D006691 3.0e-13 78.2 73 60.3
CARHR050140 Cardamine hirsuta HOM05D007037 ORTHO05D006691 3.0e-13 78.2 74 59.5
BcaC04g22368 Brassica carinata HOM05D007037 ORTHO05D006691 1.1e-12 76.3 67 61.2
C09p20100 Brassica napus HOM05D007037 ORTHO05D006691 1.1e-12 76.3 67 61.2
BolC9t54919H Brassica oleracea HOM05D007037 ORTHO05D006691 1.1e-12 76.3 67 61.2
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 6.9e-10 67.0 77 46.8
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 2.6e-09 65.1 81 45.7
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 4.5e-09 64.3 66 51.5
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 4.5e-09 64.3 77 45.5
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 7.6e-09 63.5 78 44.9
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 7.6e-09 63.5 77 49.4
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 1.0e-08 63.2 84 44.0
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 1.0e-08 63.2 77 46.8
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.0e-08 63.2 84 42.9
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 1.0e-08 63.2 77 45.5
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 1.3e-08 62.8 69 46.4
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 1.3e-08 62.8 82 42.7
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 1.7e-08 62.4 66 50.0
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 2.9e-08 61.6 84 44.0
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 2.9e-08 61.6 66 51.5
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 3.8e-08 61.2 66 48.5
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 3.8e-08 61.2 82 39.0
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 3.8e-08 61.2 66 48.5
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 4.9e-08 60.8 77 44.2
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 6.5e-08 60.5 78 42.3
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 8.4e-08 60.1 78 41.0
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 1.1e-07 59.7 66 48.5
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 1.1e-07 59.7 61 50.8
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 1.1e-07 59.7 66 51.5
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 1.4e-07 59.3 79 44.3
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 1.4e-07 59.3 61 52.5
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.5e-07 58.5 82 39.0
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 3.2e-07 58.2 78 43.6
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 3.2e-07 58.2 61 50.8
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 3.2e-07 58.2 61 47.5
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 5.5e-07 57.4 79 44.3
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 7.1e-07 57.0 60 48.3
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 9.3e-07 56.6 82 37.8
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 1.2e-06 56.2 77 45.5
Lj6g0006723 Lotus japonicus HOM05D007037 ORTHO05D006691 1.6e-06 55.8 74 44.6
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 1.6e-06 55.8 78 39.7
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 1.6e-06 55.8 82 41.5
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 2.1e-06 55.5 65 50.8
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.7e-06 55.1 61 50.8
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 3.5e-06 54.7 79 44.3
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 4.6e-06 54.3 74 43.2
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 6.0e-06 53.9 77 44.2
Peaxi162Scf01204g00120 Petunia axillaris HOM05D007037 ORTHO05D006691 6.0e-06 53.9 67 41.8
Hund23465 Selenicereus undatus HOM05D007037 ORTHO05D006691 6.0e-06 53.9 69 43.5
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 7.9e-06 53.5 76 43.4
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 7.9e-06 53.5 76 43.4
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 7.9e-06 53.5 75 44.0
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 7.9e-06 53.5 66 47.0
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 7.9e-06 53.5 66 47.0
Rhsim02G0106600 Rhododendron simsii HOM05D007037 ORTHO05D006691 7.9e-06 53.5 47 53.2


User provided reference genes

Program Settings