Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 7.3e-223 776.9 399 100.0
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 9.6e-199 696.8 359 99.7
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.0e-196 689.1 359 98.3
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 4.3e-183 644.8 361 92.2
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 6.0e-177 624.4 361 91.1
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 6.5e-163 577.8 360 85.8
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 3.3e-159 565.5 361 82.8
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 3.1e-157 558.9 361 82.8
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 3.5e-148 528.9 360 76.9
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 4.5e-148 528.5 360 78.6
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 5.5e-146 521.5 361 76.2
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 5.2e-144 515.0 361 75.9
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 6.5e-139 498.0 360 77.5
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.7e-131 473.4 360 70.6
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 2.9e-131 472.6 378 70.4
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 4.2e-130 468.8 361 72.3
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 9.1e-125 451.1 345 73.9
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 5.2e-120 435.3 368 64.7
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 8.6e-91 338.2 377 50.9
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.1e-90 337.8 378 51.3
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.2e-89 334.3 366 50.5
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 5.2e-88 328.9 368 50.0
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 3.4e-87 326.2 368 50.8
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 3.8e-86 322.8 365 49.6
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 3.8e-86 322.8 363 50.1
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 2.1e-84 317.0 359 48.7
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.1e-82 311.2 369 49.1
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 2.5e-82 310.1 368 47.8
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.5e-82 310.1 360 50.3
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 8.1e-81 305.1 363 47.9
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 3.1e-80 303.1 368 46.5
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 4.0e-80 302.8 370 48.9
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 3.4e-79 299.7 369 48.0
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 7.6e-79 298.5 371 46.1
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.4e-77 294.3 367 48.2
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.4e-77 293.5 365 45.2
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.2e-77 293.1 361 48.8
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 9.3e-77 291.6 361 45.7
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 9.3e-77 291.6 365 46.3
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 2.1e-76 290.4 365 46.0
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 2.1e-76 290.4 366 44.8
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 3.5e-76 289.7 368 47.0
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 6.0e-76 288.9 360 45.3
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 6.0e-76 288.9 387 45.7
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.3e-75 287.7 355 46.2
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 1.9e-74 283.9 370 45.9
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 9.6e-74 281.6 317 48.9
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 1.3e-73 281.2 366 45.4
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 2.8e-73 280.0 360 45.3
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 3.6e-73 279.6 358 47.5
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.8e-72 277.3 358 46.4
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 3.1e-72 276.6 370 46.8
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 9.0e-72 275.0 367 43.6
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.4e-71 273.1 367 43.6
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.7e-70 270.8 367 43.6
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 2.2e-70 270.4 356 42.4
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 8.4e-70 268.5 323 46.7
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 8.4e-70 268.5 356 46.1
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.4e-69 266.9 356 46.1
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 2.4e-69 266.9 356 46.1
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.2e-68 264.6 361 46.5
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 2.1e-68 263.8 366 42.1
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.7e-68 263.5 361 46.3
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 3.5e-68 263.1 356 45.8
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 6.0e-68 262.3 314 47.8
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.0e-67 260.0 361 44.6
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 3.9e-67 259.6 354 45.2
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 8.7e-67 258.5 365 43.6
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.9e-66 257.3 354 44.6
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.5e-66 256.9 377 41.6
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.3e-66 256.5 371 43.1
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 5.6e-66 255.8 360 43.1
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 7.4e-66 255.4 361 44.9
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 2.1e-65 253.8 382 44.5
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 9.0e-64 248.4 366 41.8
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.2e-63 248.1 335 44.8
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.5e-63 247.7 378 42.6
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 3.4e-63 246.5 367 41.1
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.8e-63 245.7 371 42.0
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 5.8e-63 245.7 331 42.3
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 7.6e-63 245.4 369 43.9
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 1.3e-62 244.6 276 54.3
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-62 244.2 374 41.7
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 2.2e-62 243.8 374 41.7
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.9e-62 243.4 367 42.5
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 8.4e-62 241.9 374 41.4
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.4e-61 241.1 355 42.5
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.5e-61 240.4 367 42.2
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 2.5e-61 240.4 377 41.4
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 2.5e-61 240.4 355 42.3
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 6.0e-60 235.7 355 41.1
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 1.3e-59 234.6 313 46.0
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.0e-59 233.4 371 40.2
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.5e-58 231.1 369 41.2
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.3e-58 229.6 329 45.3
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.8e-57 226.9 373 41.8
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 9.0e-56 221.9 343 40.5
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.5e-55 221.1 366 39.1
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 2.6e-55 220.3 304 42.1
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 2.6e-55 220.3 365 40.8
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.4e-53 214.5 406 34.2
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 3.2e-53 213.4 233 51.1
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.0e-51 208.4 234 53.4
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 4.3e-50 203.0 327 37.9
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 7.4e-50 202.2 360 41.4
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.3e-49 201.4 367 38.1
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 3.7e-49 199.9 331 37.8
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 4.8e-49 199.5 359 37.0
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.3e-49 199.1 374 38.5
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 2.0e-47 194.1 314 39.8
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.6e-47 193.7 361 35.7
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 3.4e-47 193.4 361 35.5
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 2.5e-42 177.2 277 43.3
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.8e-41 173.7 315 34.9
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 3.4e-39 166.8 261 41.0
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 3.8e-38 163.3 326 34.7
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.1e-37 161.8 153 57.5
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.6e-36 157.9 315 33.7
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.9e-29 134.4 343 31.5
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 2.3e-27 127.5 365 27.9
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 4.4e-26 123.2 232 36.6
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 1.7e-25 121.3 216 40.3
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 9.1e-24 115.5 378 29.1
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.2e-23 115.2 362 30.1
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 5.0e-22 109.8 210 35.2
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.1e-21 108.6 203 35.5
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 4.2e-21 106.7 253 31.2
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.1e-16 92.0 209 31.6
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.4e-16 90.9 232 31.9
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.1e-16 90.5 359 27.6
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 7.7e-15 85.9 309 29.4
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 3.2e-13 80.5 121 38.0
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.2e-12 78.6 141 36.2
C08p48240 Brassica napus HOM05D005393 ORTHO05D006257 1.5e-10 71.6 58 70.7
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 8.3e-09 65.9 77 44.2
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.0e-08 62.8 59 57.6


User provided reference genes

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