Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1640.6 859 100.0
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1620.1 887 95.8
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1568.9 859 96.4
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1565.8 859 96.4
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1438.3 799 95.0
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1330.1 933 78.9
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 0.0e+00 1327.8 876 83.0
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 0.0e+00 1315.1 872 82.6
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1307.7 867 83.0
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1307.7 867 83.0
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 0.0e+00 1306.2 875 81.7
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 0.0e+00 1286.9 877 81.1
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1281.5 933 77.3
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 0.0e+00 1271.5 875 79.5
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 0.0e+00 1267.3 877 80.4
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1239.6 889 78.6
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 0.0e+00 1199.9 909 74.8
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 5.9e-312 1073.9 876 69.9
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 6.9e-295 1017.3 872 68.6
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.2e-291 1006.5 864 66.4
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 5.8e-286 987.6 860 67.0
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 7.4e-281 970.7 873 66.1
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.2e-259 900.2 867 63.0
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.6e-211 739.2 906 51.3
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 2.3e-210 736.5 936 50.3
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 2.6e-209 733.0 911 50.7
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.6e-209 733.0 911 51.5
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 4.4e-209 732.3 903 50.9
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 4.1e-207 725.7 913 50.9
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.6e-206 723.8 917 50.2
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 3.0e-205 719.5 913 49.9
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 6.8e-202 708.4 922 49.7
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 4.4e-201 705.7 889 50.3
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 3.8e-200 702.6 920 48.5
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.2e-199 699.1 900 49.1
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.3e-197 693.3 923 48.6
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 5.1e-197 692.2 920 48.4
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.5e-196 690.6 914 49.0
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.8e-195 686.4 896 50.3
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 6.2e-195 685.3 892 50.1
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.4e-194 684.1 886 49.4
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 5.3e-194 682.2 913 48.6
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 5.3e-194 682.2 905 48.8
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-193 681.0 943 47.6
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 7.6e-193 678.3 913 48.4
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.3e-192 677.6 959 46.9
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 8.4e-192 674.9 910 47.7
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.1e-191 674.5 817 51.3
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.9e-191 673.7 800 52.0
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.1e-191 671.8 916 47.1
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 7.8e-190 668.3 916 48.0
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.8e-190 668.3 905 47.5
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 7.8e-190 668.3 943 47.4
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 3.0e-189 666.4 886 49.3
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 3.3e-188 662.9 901 48.8
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 5.6e-188 662.1 796 50.5
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 9.6e-188 661.4 796 50.6
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 2.8e-187 659.8 901 48.7
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 3.6e-187 659.4 801 51.2
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 2.4e-186 656.8 976 45.6
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 4.0e-186 656.0 909 48.5
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 2.0e-185 653.7 938 46.6
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 4.5e-185 652.5 796 50.6
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.8e-185 652.1 919 46.9
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.3e-184 651.0 890 47.9
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.3e-184 651.0 984 44.7
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.7e-184 650.6 811 50.7
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.4e-183 646.7 780 50.4
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 3.2e-183 646.4 1007 44.0
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 4.2e-183 646.0 927 47.6
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.2e-182 644.4 971 44.7
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 3.5e-182 642.9 804 49.0
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 7.9e-182 641.7 901 46.1
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.3e-181 641.0 934 46.6
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.8e-181 640.6 795 48.7
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.0e-181 639.8 888 47.1
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 3.0e-181 639.8 974 46.1
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 3.9e-181 639.4 1031 44.4
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 6.7e-181 638.6 919 46.4
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.5e-180 636.7 977 45.6
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.3e-180 636.0 919 46.1
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 2.1e-179 633.6 934 45.5
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 2.1e-179 633.6 898 46.1
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.8e-179 633.3 972 45.2
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 8.1e-179 631.7 740 51.6
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 5.3e-178 629.0 914 45.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 6.9e-178 628.6 996 44.7
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.2e-177 627.9 974 45.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.0e-177 627.1 942 44.7
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 5.8e-177 625.5 948 44.5
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.9e-176 623.2 972 45.1
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 4.2e-175 619.4 789 47.8
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.2e-174 617.8 859 47.3
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 7.9e-174 615.1 884 46.8
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 2.3e-173 613.6 800 48.4
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.3e-173 613.6 918 44.8
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 3.0e-173 613.2 920 44.6
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.3e-171 607.8 799 47.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.1e-170 604.7 980 44.3
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.2e-169 601.3 813 48.1
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.0e-169 600.5 823 45.9
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.0e-168 598.2 931 44.0
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.2e-168 597.0 793 47.0
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-167 594.3 852 46.2
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.4e-167 594.3 890 44.9
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 4.2e-167 592.8 920 43.9
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 2.7e-166 590.1 797 47.3
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-165 588.2 847 46.0
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.3e-165 587.8 906 46.1
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.3e-165 587.8 1098 39.4
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.3e-165 587.0 802 46.3
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.3e-163 581.3 884 44.2
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.3e-160 571.2 793 45.1
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.8e-160 569.7 812 45.9
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 5.0e-160 569.3 830 45.4
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.4e-159 567.8 830 45.3
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 3.0e-157 560.1 1002 39.7
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 3.1e-154 550.1 871 42.6
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 4.1e-154 549.7 1002 39.2
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 5.9e-153 545.8 878 42.6
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 2.2e-152 543.9 798 46.2
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.8e-147 526.9 770 45.5
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.3e-144 518.1 817 43.0
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.5e-143 513.8 842 43.1
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.1e-138 498.4 800 41.8
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.2e-126 458.4 927 39.5
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 3.0e-125 453.8 918 39.8
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.5e-119 434.9 782 39.8
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 7.2e-119 432.6 836 38.2
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 5.9e-113 412.9 814 36.9
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 5.9e-113 412.9 814 36.9
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 9.5e-111 405.6 886 35.7
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 2.3e-96 357.8 773 35.6
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 7.3e-95 352.8 667 38.4
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 7.6e-92 342.8 368 53.3
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 5.4e-90 336.7 539 43.2
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 2.8e-86 324.3 174 98.3
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.3e-78 298.9 342 52.3
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.7e-72 278.5 285 52.6
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.6e-65 255.4 952 27.6
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 5.6e-63 246.9 347 48.4
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.7e-57 228.0 251 53.0
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 6.7e-56 223.4 472 36.9
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-49 202.6 259 43.6
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.6e-49 202.2 455 39.1
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 6.3e-46 190.3 388 41.2
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 3.6e-41 174.5 137 69.3
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 7.4e-39 166.8 497 31.2
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.2e-30 138.7 177 44.6
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.6e-28 132.5 169 50.9
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.5e-28 131.3 92 72.8
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.5e-26 124.0 178 46.1
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 5.5e-26 124.0 156 43.6
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.7e-25 121.7 92 72.8
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 6.7e-24 117.1 111 55.9
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-22 112.8 86 67.4
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.4e-21 109.4 159 45.9
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 8.5e-19 100.1 79 65.8
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 3.2e-18 98.2 89 59.6
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 4.7e-17 94.4 72 61.1
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 1.4e-16 92.8 89 57.3
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 5.2e-16 90.9 71 66.2
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 6.8e-16 90.5 100 53.0
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 4.4e-15 87.8 59 72.9
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 7.5e-15 87.0 118 42.4
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 2.8e-14 85.1 108 46.3
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 4.8e-14 84.3 57 77.2
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.2e-12 79.7 59 64.4
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-12 79.3 63 71.4
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 7.7e-12 77.0 92 48.9
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 5.0e-11 74.3 92 44.6
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.1e-09 68.9 126 39.7
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 1.4e-08 66.2 84 42.9
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 1.8e-08 65.9 60 53.3
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 6.8e-08 63.9 69 46.4
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.5e-07 62.8 60 56.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 9.8e-07 60.1 90 45.6
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.7e-06 59.3 127 33.9
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 8.3e-06 57.0 42 57.1


User provided reference genes

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