Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 2.9e-56 223.0 195 100.0
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 6.4e-56 221.9 195 97.9
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 1.5e-49 200.7 195 86.2
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 1.5e-49 200.7 195 86.2
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 9.6e-44 181.4 167 97.0
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 2.3e-37 160.2 195 78.5
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 9.3e-31 138.3 195 73.3
AT1G10890 Arabidopsis thaliana HOM05D003347 ORTHO05D003821 5.0e-24 115.9 195 73.3
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 3.0e-21 106.7 134 72.4
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.8e-19 100.1 182 62.6
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 4.8e-19 99.4 182 60.4
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 1.1e-18 98.2 195 67.7
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.4e-18 97.1 189 70.4
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.5e-17 94.4 193 60.6
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.0e-17 94.0 193 65.3
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 5.0e-16 89.4 166 65.1
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 6.5e-16 89.0 195 54.9
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 8.5e-16 88.6 167 55.7
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.4e-15 87.8 193 67.9
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 4.2e-15 86.3 195 54.4
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.5e-15 85.9 193 59.6
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 7.2e-15 85.5 182 65.9
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.2e-14 84.7 197 63.5
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.6e-14 84.3 209 61.2
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.6e-14 84.3 167 62.3
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.6e-14 84.3 194 62.4
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.6e-14 84.3 194 58.8
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 2.1e-14 84.0 167 67.7
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 2.1e-14 84.0 183 68.9
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 2.1e-14 84.0 192 61.5
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 2.7e-14 83.6 195 63.6
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 2.7e-14 83.6 192 65.1
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.7e-14 83.6 194 61.9
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.6e-14 83.2 195 54.9
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 4.7e-14 82.8 195 55.9
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 7.9e-14 82.0 195 66.7
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 1.8e-13 80.9 194 58.8
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.3e-13 80.5 196 61.2
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 3.0e-13 80.1 167 66.5
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 5.2e-13 79.3 141 59.6
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 5.2e-13 79.3 167 61.1
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 5.2e-13 79.3 167 61.1
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.5e-12 77.8 182 59.9
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.0e-12 77.4 192 58.3
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 2.6e-12 77.0 194 62.9
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 4.4e-12 76.3 182 63.7
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 5.7e-12 75.9 194 63.4
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 5.7e-12 75.9 167 60.5
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 5.7e-12 75.9 141 65.2
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 9.7e-12 75.1 138 50.7
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.7e-12 75.1 192 53.1
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 2.2e-11 73.9 194 62.9
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 6.3e-11 72.4 167 56.9
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 8.2e-11 72.0 195 59.5
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 8.2e-11 72.0 259 42.5
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.1e-10 71.6 195 52.8
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 1.1e-10 71.6 199 57.3
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.1e-10 71.6 182 62.1
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.4e-10 71.2 193 62.7
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.4e-10 71.2 191 54.5
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 2.4e-10 70.5 90 54.4
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 3.1e-10 70.1 167 55.1
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 3.1e-10 70.1 146 63.7
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.1e-10 69.7 121 41.3
AL1G21850 Arabidopsis lyrata HOM05D003347 ORTHO05D003821 5.3e-10 69.3 195 64.1
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 7.0e-10 68.9 166 63.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.2e-09 68.2 167 66.5
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.2e-09 68.2 164 58.5
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 3.5e-09 66.6 190 55.3
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 3.5e-09 66.6 157 59.9
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 5.9e-09 65.9 171 51.5
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 7.7e-09 65.5 179 54.2
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 1.0e-08 65.1 167 58.7
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 1.0e-08 65.1 160 48.8
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 1.7e-08 64.3 195 54.9
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 2.9e-08 63.5 176 58.0
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.9e-08 63.5 193 63.2
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 2.9e-08 63.5 167 65.3
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 3.8e-08 63.2 189 59.3
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 5.0e-08 62.8 186 36.6
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 6.5e-08 62.4 69 53.6
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 8.5e-08 62.0 193 63.7
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 1.5e-07 61.2 166 48.8
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.9e-07 60.8 108 50.9
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.9e-07 60.8 108 50.9
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 1.9e-07 60.8 195 62.6
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.9e-07 60.8 141 63.1
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.9e-07 60.8 163 57.1
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.9e-07 60.8 192 60.4
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.9e-07 60.8 200 44.5
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.9e-07 60.8 188 39.9
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.5e-07 60.5 163 58.3
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.2e-07 60.1 142 59.9
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 3.2e-07 60.1 94 41.5
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.2e-07 59.7 72 55.6
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 5.5e-07 59.3 138 57.2
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 9.4e-07 58.5 163 53.4
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 9.4e-07 58.5 212 47.2
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.2e-06 58.2 141 62.4
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.6e-06 57.8 167 55.7
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.6e-06 57.8 70 50.0
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 2.1e-06 57.4 185 54.6
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.1e-06 57.4 178 42.7
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.7e-06 57.0 70 50.0
BcaNung04762 Brassica carinata HOM05D003347 ORTHO05D003821 4.7e-06 56.2 39 84.6
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 4.7e-06 56.2 85 57.6
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.7e-06 56.2 197 55.3
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 4.7e-06 56.2 163 53.4
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 6.1e-06 55.8 125 67.2
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 8.0e-06 55.5 158 53.2


User provided reference genes

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