Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p09190 Brassica napus HOM05D000916 ORTHO05D011795 2.6e-61 238.4 113 100.0
C07p62980 Brassica napus HOM05D000916 ORTHO05D011795 1.3e-55 219.5 127 85.0
BolC7t46709H Brassica oleracea HOM05D000916 ORTHO05D011795 1.3e-55 219.5 127 85.0
BolC9t55962H Brassica oleracea HOM05D000916 ORTHO05D011795 1.7e-55 219.2 127 84.3
A04p07570 Brassica napus HOM05D000916 ORTHO05D011795 2.3e-49 198.7 128 78.9
C09p35340 Brassica napus HOM05D000916 ORTHO05D011795 5.7e-48 194.1 137 74.5
BolC9t56376H Brassica oleracea HOM05D000916 ORTHO05D011795 5.7e-48 194.1 137 74.5
C03p57340 Brassica napus HOM05D000916 ORTHO05D011795 4.8e-47 191.0 122 77.9
C02p41330 Brassica napus HOM05D000916 ORTHO05D011795 1.8e-46 189.1 122 77.9
C09p31030 Brassica napus HOM05D000916 ORTHO05D011795 3.1e-46 188.3 122 77.0
C04p51520 Brassica napus HOM05D000916 ORTHO05D011795 1.6e-45 186.0 114 79.8
BolC9t56071H Brassica oleracea HOM05D000916 ORTHO05D011795 1.6e-45 186.0 110 81.8
BolC3t18010H Brassica oleracea HOM05D000916 ORTHO05D011795 2.9e-44 181.8 110 80.0
BcaC04g21401 Brassica carinata HOM05D000916 ORTHO05D011795 3.8e-44 181.4 116 77.6
BcaC02g08704 Brassica carinata HOM05D000916 ORTHO05D011795 8.3e-39 163.7 92 83.7
BcaC01g02997 Brassica carinata HOM05D000916 ORTHO05D011795 5.4e-38 161.0 86 88.4
BcaC04g21504 Brassica carinata HOM05D000916 ORTHO05D011795 3.5e-37 158.3 86 87.2
BolC8t48497H Brassica oleracea HOM05D000916 ORTHO05D011795 5.9e-37 157.5 72 95.8
BcaB08g36567 Brassica carinata HOM05D000916 ORTHO05D008653 2.0e-32 142.5 91 74.7
BcaC04g19381 Brassica carinata HOM05D000916 ORTHO05D008653 2.8e-31 138.7 91 72.5
A03p66130 Brassica napus HOM05D000916 ORTHO05D008653 2.8e-31 138.7 91 72.5
A10p19910 Brassica napus HOM05D000916 ORTHO05D008653 2.8e-31 138.7 91 72.5
C09p56310 Brassica napus HOM05D000916 ORTHO05D008653 2.8e-31 138.7 91 72.5
BolC9t58500H Brassica oleracea HOM05D000916 ORTHO05D008653 2.8e-31 138.7 91 72.5
BraA03t15665Z Brassica rapa HOM05D000916 ORTHO05D008653 2.8e-31 138.7 91 72.5
BraA10t44066Z Brassica rapa HOM05D000916 ORTHO05D008653 2.8e-31 138.7 91 72.5
Sp6g24550 Schrenkiella parvula HOM05D000916 ORTHO05D008653 2.0e-29 132.5 91 68.1
Thhalv10013775m.g Eutrema salsugineum HOM05D000916 ORTHO05D008653 1.3e-28 129.8 92 69.6
Psat2g088040 Pisum sativum HOM05D000916 ORTHO05D008653 9.5e-27 123.6 88 63.6
Ca_13814_v3 Cicer arietinum L. HOM05D000916 ORTHO05D008653 1.2e-26 123.2 91 61.5
Medtr5g056200 Medicago truncatula HOM05D000916 ORTHO05D008653 1.2e-26 123.2 90 61.1
TPR.G38291 Trifolium pratense HOM05D000916 ORTHO05D008653 1.2e-26 123.2 89 62.9
C02p27510 Brassica napus HOM05D000916 ORTHO05D011795 2.1e-26 122.5 60 96.7
Carub.0006s1820 Capsella rubella HOM05D000916 ORTHO05D008653 2.1e-26 122.5 79 70.9
AT5G19850 Arabidopsis thaliana HOM05D000916 ORTHO05D008653 3.6e-26 121.7 79 70.9
Cfa009571 Carpinus fangiana HOM05D000916 ORTHO05D008653 6.1e-26 120.9 95 58.9
Lj2g0000465 Lotus japonicus HOM05D000916 ORTHO05D008653 6.1e-26 120.9 88 62.5
Glyma.18G000300 Glycine max HOM05D000916 ORTHO05D008653 8.0e-26 120.6 89 61.8
Prupe.6G143300 Prunus persica HOM05D000916 ORTHO05D008653 8.0e-26 120.6 87 60.9
CARHR193030 Cardamine hirsuta HOM05D000916 ORTHO05D008653 1.8e-25 119.4 79 69.6
Actinidia30433 Actinidia chinensis HOM05D000916 ORTHO05D008653 2.3e-25 119.0 90 58.9
CANSAT54G1745 Cannabis sativa HOM05D000916 ORTHO05D008653 2.3e-25 119.0 85 62.4
CiPaw.14G135800 Carya illinoinensis HOM05D000916 ORTHO05D008653 5.2e-25 117.9 91 58.2
Ciclev10015550m.g Citrus clementina HOM05D000916 ORTHO05D008653 5.2e-25 117.9 80 63.8
Duzib168G0456 Durio zibethinus HOM05D000916 ORTHO05D008653 5.2e-25 117.9 91 59.3
AL6G31370 Arabidopsis lyrata HOM05D000916 ORTHO05D008653 6.8e-25 117.5 79 68.4
Cpa.g.sc119.56 Carica papaya HOM05D000916 ORTHO05D008653 6.8e-25 117.5 81 60.5
VMungo1383G0463 Vigna mungo HOM05D000916 ORTHO05D008653 6.8e-25 117.5 87 62.1
COL.COLO4_35043 Corchorus olitorius HOM05D000916 ORTHO05D008653 8.9e-25 117.1 82 63.4
Nitab4.5_0000978g0180 Nicotiana tabacum HOM05D000916 ORTHO05D008653 8.9e-25 117.1 80 65.0
Solyc12g098660.3 Solanum lycopersicum HOM05D000916 ORTHO05D008653 8.9e-25 117.1 80 65.0
FAN25G1294 Fragaria x ananassa HOM05D000916 ORTHO05D008653 1.2e-24 116.7 87 57.5
RcHm_v2.0_Chr5g0083221 Rosa chinensis HOM05D000916 ORTHO05D008653 1.2e-24 116.7 87 57.5
Oeu000521.1 Olea europaea HOM05D000284 ORTHO05D000805 1.5e-24 116.3 87 60.9
arahy.Tifrunner.gnm1.ann1.SDBE87 Arachis hypogaea HOM05D000916 ORTHO05D008653 2.0e-24 115.9 86 62.8
Gohir.A13G210000 Gossypium hirsutum HOM05D000916 ORTHO05D008653 2.0e-24 115.9 82 62.2
Gorai.013G244300 Gossypium raimondii HOM05D000916 ORTHO05D008653 2.0e-24 115.9 82 62.2
Sopen12g033410 Solanum pennellii HOM05D000916 ORTHO05D008653 2.0e-24 115.9 80 63.8
GSVIVG01025450001 Vitis vinifera HOM05D000916 ORTHO05D008653 2.0e-24 115.9 87 57.5
Lalb_Chr01g0009441 Lupinus albus HOM05D000916 ORTHO05D008653 2.6e-24 115.5 88 60.2
Hund21633 Selenicereus undatus HOM05D000916 ORTHO05D008653 2.6e-24 115.5 87 57.5
CSS0001504 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 3.4e-24 115.2 87 57.5
ECA248G2975 Erigeron canadensis HOM05D000916 ORTHO05D008653 3.4e-24 115.2 98 57.1
FvH4_3g45410 Fragaria vesca HOM05D000916 ORTHO05D008653 3.4e-24 115.2 87 56.3
FAN11G2367 Fragaria x ananassa HOM05D000916 ORTHO05D008653 3.4e-24 115.2 87 56.3
FAN21G1400 Fragaria x ananassa HOM05D000916 ORTHO05D008653 3.4e-24 115.2 87 56.3
MD11G1007800 Malus domestica HOM05D000916 ORTHO05D008653 3.4e-24 115.2 80 62.5
Rhsim01G0184600 Rhododendron simsii HOM05D000916 ORTHO05D008653 3.4e-24 115.2 87 57.5
Thecc.09G208000 Theobroma cacao HOM05D000916 ORTHO05D008653 3.4e-24 115.2 91 58.2
Nitab4.5_0004758g0020 Nicotiana tabacum HOM05D000916 ORTHO05D008653 4.4e-24 114.8 80 63.8
Os07g0575800 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D008653 4.4e-24 114.8 80 62.5
PGSC0003DMG402004581 Solanum tuberosum HOM05D000916 ORTHO05D008653 4.4e-24 114.8 80 63.8
Eucgr.B03607 Eucalyptus grandis HOM05D000916 ORTHO05D008653 5.7e-24 114.4 85 60.0
CSS0014256 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 7.5e-24 114.0 85 58.8
Lj1A524T16 Lonicera japonica HOM05D000916 ORTHO05D008653 7.5e-24 114.0 87 59.8
MBI04_g09718_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D008653 7.5e-24 114.0 88 56.8
arahy.Tifrunner.gnm1.ann1.9H9I7P Arachis hypogaea HOM05D000916 ORTHO05D008653 9.8e-24 113.6 86 61.6
FAN16G2348 Fragaria x ananassa HOM05D000916 ORTHO05D008653 9.8e-24 113.6 87 56.3
Potri.003G219700 Populus trichocarpa HOM05D000916 ORTHO05D008653 9.8e-24 113.6 91 56.0
Prupe.6G005000 Prunus persica HOM05D000916 ORTHO05D008653 9.8e-24 113.6 87 57.5
QL01p008693 Quercus lobata HOM05D000916 ORTHO05D008653 9.8e-24 113.6 85 57.6
Cc03_g10030 Coffea canephora HOM05D000916 ORTHO05D008653 1.3e-23 113.2 80 63.8
TWI32G0708 Tripterygium wilfordii HOM05D000916 ORTHO05D008653 1.3e-23 113.2 91 54.9
HPP92_001606 Vanilla planifolia HOM05D000916 ORTHO05D008653 1.3e-23 113.2 85 58.8
Aa31LG9G12530 Aethionema arabicum HOM05D000916 ORTHO05D008653 1.7e-23 112.8 80 61.2
CAN.G767.1 Capsicum annuum HOM05D000916 ORTHO05D008653 1.7e-23 112.8 80 62.5
Nn7g35884 Nelumbo nucifera HOM05D000916 ORTHO05D008653 1.7e-23 112.8 80 58.8
THA.LOC104811067 Tarenaya hassleriana HOM05D000916 ORTHO05D008653 1.7e-23 112.8 84 59.5
Atru.chr3.2085 Acer truncatum HOM05D000916 ORTHO05D008653 2.9e-23 112.1 80 61.2
BcaC07g38084 Brassica carinata HOM05D000353 ORTHO05D000174 2.9e-23 112.1 54 88.9
EL10Ac4g10376 Beta vulgaris HOM05D000916 ORTHO05D008653 4.9e-23 111.3 80 60.0
PSO339G1413 Papaver somniferum HOM05D000916 ORTHO05D008653 4.9e-23 111.3 85 57.6
PSO384G1579 Papaver somniferum HOM05D000916 ORTHO05D008653 4.9e-23 111.3 85 57.6
Sc06g0004240 Simmondsia chinensis HOM05D000916 ORTHO05D008653 4.9e-23 111.3 84 60.7
TAR633G1643 Trochodendron aralioides HOM05D000916 ORTHO05D008653 4.9e-23 111.3 87 59.8
Zm00001eb325320 Zea mays HOM05D000916 ORTHO05D008653 4.9e-23 111.3 80 61.2
ATR0737G073 Amborella trichopoda HOM05D000916 ORTHO05D008653 6.4e-23 110.9 91 56.0
AUR62019171 Chenopodium quinoa HOM05D000916 ORTHO05D008653 6.4e-23 110.9 84 58.3
Migut.G01135 Erythranthe guttata HOM05D000916 ORTHO05D008653 8.3e-23 110.5 82 61.0
Ah.04g161500 Amaranthus hybridus HOM05D001490 ORTHO05D008653 1.1e-22 110.2 80 61.2
ClCG02G024330 Citrullus lanatus HOM05D000916 ORTHO05D008653 1.1e-22 110.2 83 56.6
HanXRQChr11g0344701 Helianthus annuus HOM05D000916 ORTHO05D008653 1.8e-22 109.4 80 60.0
SalBow2G3623 Salvia bowleyana HOM05D000916 ORTHO05D008653 1.8e-22 109.4 88 59.1
MELO3C014720.2 Cucumis melo HOM05D000916 ORTHO05D008653 2.4e-22 109.0 80 57.5
CsaV3_4G017470 Cucumis sativus L. HOM05D000916 ORTHO05D008653 2.4e-22 109.0 83 56.6
Pp3c19_19860 Physcomitrium patens HOM05D000916 ORTHO05D008653 2.4e-22 109.0 80 60.0
Lsat_1_v5_gn_1_67460 Lactuca sativa HOM05D000916 ORTHO05D008653 3.2e-22 108.6 75 61.3
Manes.15G108100 Manihot esculenta HOM05D000916 ORTHO05D008653 4.1e-22 108.2 87 52.9
Sed0003044 Sechium edule HOM05D000916 ORTHO05D008653 5.4e-22 107.8 91 50.5
CDE10G1189 Ceratophyllum demersum HOM05D000916 ORTHO05D008653 7.0e-22 107.5 92 54.3
MSTRG.4278 Avicennia marina HOM05D000916 ORTHO05D008653 2.0e-21 105.9 85 57.6
AUR62000001 Chenopodium quinoa HOM05D000916 ORTHO05D008653 2.7e-21 105.5 84 54.8
Aqoxy2G00552 Aquilegia oxysepala HOM05D000916 ORTHO05D008653 5.9e-21 104.4 82 53.7
SEGI_04744 Sequoiadendron giganteum HOM05D000916 ORTHO05D008653 5.0e-20 101.3 79 53.2
BcaNung03392 Brassica carinata HOM05D000916 ORTHO05D011795 3.3e-19 98.6 60 81.7
CBR_g44394 Chara braunii HOM05D000916 ORTHO05D008653 3.3e-19 98.6 98 46.9
SMO304G0056 Selaginella moellendorffii HOM05D000916 ORTHO05D008653 6.2e-18 94.4 85 50.6
Sabra03G0163600 Salix brachista HOM05D000916 ORTHO05D008653 3.1e-17 92.0 106 42.5
Sc06g0004190 Simmondsia chinensis HOM05D000916 ORTHO05D008653 4.0e-17 91.7 66 60.6
unitig_0.g2425 Utricularia gibba HOM05D000916 ORTHO05D008653 7.5e-16 87.4 66 56.1
Peaxi162Scf00378g00518 Petunia axillaris HOM05D000916 ORTHO05D008653 8.3e-15 84.0 80 52.5
Dinv13456 Davidia involucrata HOM05D000916 ORTHO05D011795 4.1e-14 81.6 46 76.1
MCO05G282 Micromonas commoda HOM05D000916 ORTHO05D008653 9.2e-14 80.5 82 47.6
Gorai.013G247100 Gossypium raimondii HOM05D000916 ORTHO05D011795 2.0e-13 79.3 46 71.7
Gohir.D13G216666 Gossypium hirsutum HOM05D000916 ORTHO05D011795 3.5e-13 78.6 52 63.5
BolC3t19869H Brassica oleracea HOM05D000916 ORTHO05D011795 3.3e-11 72.0 102 47.1
Cre12.g558550 Chlamydomonas reinhardtii HOM05D000916 ORTHO05D008653 1.4e-09 66.6 82 42.7
A01p24560 Brassica napus HOM05D000916 ORTHO05D011795 2.0e-08 62.8 92 44.6
BcaC01g00131 Brassica carinata HOM05D000916 ORTHO05D011795 3.4e-08 62.0 92 44.6
Gorai.003G126100 Gossypium raimondii HOM05D000916 ORTHO05D011795 5.8e-08 61.2 57 47.4
Gohir.D03G119666 Gossypium hirsutum HOM05D000916 ORTHO05D011795 7.5e-08 60.8 57 47.4
PRCOL_00001611 Prasinoderma coloniale HOM05D000916 ORTHO05D008653 2.9e-07 58.9 80 41.2


User provided reference genes

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