Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p08680 Brassica napus HOM05D004181 ORTHO05D039090 1.2e-47 193.0 103 100.0
BcaC05g24879 Brassica carinata HOM05D004181 ORTHO05D039090 5.2e-40 167.5 96 94.8
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 1.5e-18 96.3 58 91.4
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 1.5e-18 96.3 58 91.4
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 3.3e-18 95.1 58 89.7
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 7.3e-18 94.0 58 87.9
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 1.3e-17 93.2 58 89.7
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 1.3e-17 93.2 58 89.7
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 6.2e-17 90.9 58 84.5
THA.LOC104820110 Tarenaya hassleriana HOM05D004181 ORTHO05D005610 1.8e-16 89.4 58 82.8
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 1.4e-13 79.7 58 75.9
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 1.2e-12 76.6 58 74.1
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 1.2e-12 76.6 58 74.1
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 1.2e-12 76.6 58 72.4
Cpa.g.sc16.105 Carica papaya HOM05D004181 ORTHO05D005610 1.6e-12 76.3 58 74.1
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 3.5e-12 75.1 58 69.0
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 3.5e-12 75.1 58 69.0
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 4.6e-12 74.7 58 72.4
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 4.6e-12 74.7 58 70.7
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 6.0e-12 74.3 58 72.4
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 6.0e-12 74.3 58 72.4
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 7.8e-12 73.9 58 70.7
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 1.0e-11 73.6 58 70.7
Gohir.A02G045700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.0e-11 73.6 58 70.7
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.0e-11 73.6 58 70.7
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.0e-11 73.6 58 70.7
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 1.0e-11 73.6 58 70.7
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 1.0e-11 73.6 58 72.4
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 1.3e-11 73.2 58 67.2
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 1.3e-11 73.2 58 72.4
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 1.7e-11 72.8 58 67.2
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 2.3e-11 72.4 58 70.7
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 2.3e-11 72.4 58 69.0
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 2.3e-11 72.4 58 69.0
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 2.3e-11 72.4 58 72.4
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 3.0e-11 72.0 58 69.0
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 3.9e-11 71.6 58 69.0
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 3.9e-11 71.6 58 69.0
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 5.1e-11 71.2 58 69.0
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 5.1e-11 71.2 58 69.0
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 5.1e-11 71.2 58 63.8
GSVIVG01017819001 Vitis vinifera HOM05D004181 ORTHO05D005610 6.6e-11 70.9 58 67.2
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 8.7e-11 70.5 58 67.2
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 8.7e-11 70.5 58 67.2
Gohir.A10G101825 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.1e-10 70.1 58 67.2
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 1.1e-10 70.1 58 67.2
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 1.5e-10 69.7 58 67.2
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 1.5e-10 69.7 58 69.0
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 1.5e-10 69.7 58 65.5
DCAR_024617 Daucus carota HOM05D004181 ORTHO05D005610 1.9e-10 69.3 58 65.5
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 1.9e-10 69.3 58 63.8
CiPaw.02G087200 Carya illinoinensis HOM05D004181 ORTHO05D005610 2.5e-10 68.9 58 65.5
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 2.5e-10 68.9 58 65.5
COL.COLO4_13939 Corchorus olitorius HOM05D004181 ORTHO05D005610 3.3e-10 68.6 58 67.2
SHI00295 Sapria himalayana HOM05D004181 ORTHO05D005610 3.3e-10 68.6 58 63.8
Lalb_Chr15g0087091 Lupinus albus HOM05D004181 ORTHO05D005610 4.3e-10 68.2 58 65.5
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 4.3e-10 68.2 58 63.8
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 4.3e-10 68.2 58 65.5
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 5.6e-10 67.8 58 63.8
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 5.6e-10 67.8 58 67.2
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 5.6e-10 67.8 58 67.2
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 5.6e-10 67.8 58 67.2
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 5.6e-10 67.8 58 67.2
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 5.6e-10 67.8 58 63.8
vmacro08213 Vaccinium macrocarpon HOM05D004181 ORTHO05D005610 5.6e-10 67.8 58 65.5
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 7.3e-10 67.4 91 45.1
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 7.3e-10 67.4 58 65.5
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.3e-10 67.4 58 65.5
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.3e-10 67.4 58 65.5
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.3e-10 67.4 58 65.5
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.3e-10 67.4 58 65.5
Sc13g0003670 Simmondsia chinensis HOM05D004181 ORTHO05D005610 9.6e-10 67.0 58 63.8
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 1.3e-09 66.6 58 63.8
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 1.3e-09 66.6 58 63.8
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 1.3e-09 66.6 58 63.8
Peaxi162Scf00075g01553 Petunia axillaris HOM05D004181 ORTHO05D005610 1.3e-09 66.6 58 65.5
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 1.6e-09 66.2 58 63.8
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 1.6e-09 66.2 58 58.6
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 1.6e-09 66.2 58 63.8
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 1.6e-09 66.2 58 62.1
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 2.1e-09 65.9 58 62.1
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 2.1e-09 65.9 58 63.8
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 2.1e-09 65.9 58 65.5
Sopen08g004800 Solanum pennellii HOM05D004181 ORTHO05D005610 2.1e-09 65.9 58 65.5
PGR004G0905 Punica granatum HOM05D004181 ORTHO05D005610 2.8e-09 65.5 58 65.5
SalBow5G0241 Salvia bowleyana HOM05D004181 ORTHO05D005610 2.8e-09 65.5 58 63.8
SalBow5G5345 Salvia bowleyana HOM05D004181 ORTHO05D005610 2.8e-09 65.5 58 63.8
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 3.6e-09 65.1 58 63.8
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 4.8e-09 64.7 58 63.8
SGA_v2.0_scaffold89G27558 Striga asiatica HOM05D004181 ORTHO05D005610 4.8e-09 64.7 58 62.1
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 8.1e-09 63.9 58 63.8
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 8.1e-09 63.9 91 44.0
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 8.1e-09 63.9 58 63.8
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 8.1e-09 63.9 58 58.6
ClCG05G005760 Citrullus lanatus HOM05D004181 ORTHO05D005610 1.1e-08 63.5 58 62.1
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 2.4e-08 62.4 58 60.3
Lsat_1_v5_gn_6_15980 Lactuca sativa HOM05D004181 ORTHO05D005610 2.4e-08 62.4 58 62.1
SMO144G0053 Selaginella moellendorffii HOM05D004181 ORTHO05D005610 3.1e-08 62.0 55 60.0
SEGI_19119 Sequoiadendron giganteum HOM05D004181 ORTHO05D005610 3.1e-08 62.0 56 58.9
MELO3C006602.2 Cucumis melo HOM05D004181 ORTHO05D005610 6.9e-08 60.8 57 59.6
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 6.9e-08 60.8 58 58.6
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 6.9e-08 60.8 58 60.3
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 1.5e-07 59.7 58 58.6
CDE12G0304 Ceratophyllum demersum HOM05D004181 ORTHO05D005610 2.0e-07 59.3 58 60.3
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 2.6e-07 58.9 58 56.9
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 3.4e-07 58.5 58 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2942 Anthoceros agrestis HOM05D004181 ORTHO05D005610 4.5e-07 58.2 58 53.4


User provided reference genes

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