Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p08330 Brassica napus HOM05D011270 ORTHO05D012905 3.8e-87 324.7 152 100.0
BolC5t29583H Brassica oleracea HOM05D011270 ORTHO05D012905 1.2e-85 319.7 150 98.7
A06p06850 Brassica napus HOM05D011270 ORTHO05D012905 1.6e-82 309.3 150 96.0
BraA06t23899Z Brassica rapa HOM05D011270 ORTHO05D012905 1.6e-82 309.3 150 96.0
BcaC07g38545 Brassica carinata HOM05D011270 ORTHO05D012905 1.1e-65 253.4 155 78.7
BolC8t48985H Brassica oleracea HOM05D011270 ORTHO05D012905 1.1e-65 253.4 155 78.7
C08p13500 Brassica napus HOM05D011270 ORTHO05D012905 1.4e-65 253.1 155 79.4
A08p34120 Brassica napus HOM05D011270 ORTHO05D012905 6.9e-65 250.8 155 78.7
BcaC07g38553 Brassica carinata HOM05D011270 ORTHO05D012905 5.9e-64 247.7 155 76.1
BraA08t35324Z Brassica rapa HOM05D011270 ORTHO05D012905 2.2e-63 245.7 154 76.6
BcaC07g38551 Brassica carinata HOM05D011270 ORTHO05D012905 8.5e-63 243.8 155 75.5
BcaC05g24800 Brassica carinata HOM05D011270 ORTHO05D012905 1.4e-62 243.0 127 89.8
BolC8t48976H Brassica oleracea HOM05D011270 ORTHO05D012905 1.2e-61 240.0 155 74.8
CARHR010290 Cardamine hirsuta HOM05D011270 ORTHO05D012905 3.2e-54 215.3 147 70.7
Carub.0001s0960 Capsella rubella HOM05D011270 ORTHO05D012905 3.6e-53 211.8 154 66.9
Sp1g08810 Schrenkiella parvula HOM05D001270 ORTHO05D001099 1.1e-49 200.3 137 74.5
C08p13460 Brassica napus HOM05D011270 ORTHO05D012905 1.2e-24 117.1 68 77.9
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 3.4e-11 72.4 152 34.9
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 8.3e-10 67.8 90 43.3
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.4e-09 66.2 92 43.5
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 7.0e-09 64.7 102 36.3
Phvul.001G030900 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 9.2e-09 64.3 103 35.9
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.6e-08 63.5 145 34.5
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.0e-08 63.2 143 33.6
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.6e-08 62.0 143 33.6
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 7.8e-08 61.2 91 37.4
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.3e-07 60.5 94 36.2
VMungo0647G0350 Vigna mungo HOM05D014755 ORTHO05D005146 1.3e-07 60.5 104 33.7
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.7e-07 60.1 147 33.3
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 2.3e-07 59.7 157 32.5
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.0e-07 59.3 90 36.7
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 3.0e-07 59.3 94 38.3
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 3.9e-07 58.9 141 31.9
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 5.0e-07 58.5 134 28.4
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 6.6e-07 58.2 88 38.6
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-06 57.0 153 30.7
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.5e-06 57.0 103 36.9
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 2.5e-06 56.2 152 30.9
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.3e-06 55.8 109 34.9
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 3.3e-06 55.8 153 32.7
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.3e-06 55.5 96 38.5
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 4.3e-06 55.5 90 35.6
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 5.6e-06 55.1 101 39.6
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 7.3e-06 54.7 117 33.3
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 7.3e-06 54.7 88 40.9
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 9.5e-06 54.3 99 36.4
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 9.5e-06 54.3 97 38.1
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 9.5e-06 54.3 97 36.1


User provided reference genes

Program Settings