Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p06950 Brassica napus HOM05D003118 ORTHO05D003618 4.8e-146 521.2 264 100.0
BolC5t29453H Brassica oleracea HOM05D003118 ORTHO05D032428 6.7e-100 367.9 186 96.8
A06p05760 Brassica napus HOM05D003118 ORTHO05D003618 1.6e-88 330.1 183 89.6
BraA06t23787Z Brassica rapa HOM05D003118 ORTHO05D003618 1.2e-85 320.5 196 83.2
BcaB07g34111 Brassica carinata HOM05D003118 ORTHO05D003618 3.7e-74 282.3 189 77.2
C08p49770 Brassica napus HOM05D003118 ORTHO05D003618 1.3e-58 230.7 188 63.8
BcaC07g41918 Brassica carinata HOM05D003118 ORTHO05D003618 4.9e-58 228.8 188 63.3
BolC8t52504H Brassica oleracea HOM05D003118 ORTHO05D003618 6.4e-58 228.4 188 63.3
BraA09t41913Z Brassica rapa HOM05D003118 ORTHO05D003618 8.3e-58 228.0 191 62.3
BcaB03g13535 Brassica carinata HOM05D003118 ORTHO05D003618 4.1e-57 225.7 181 65.2
BraA08t35403Z Brassica rapa HOM05D003118 ORTHO05D003618 4.1e-57 225.7 193 62.2
A09p65700 Brassica napus HOM05D003118 ORTHO05D003618 5.4e-57 225.3 191 61.8
BolC8t48874H Brassica oleracea HOM05D003118 ORTHO05D003618 3.5e-56 222.6 193 62.2
A08p34920 Brassica napus HOM05D003118 ORTHO05D003618 4.6e-56 222.2 193 61.1
C08p12330 Brassica napus HOM05D003118 ORTHO05D003618 1.3e-55 220.7 193 62.2
Thhalv10007035m.g Eutrema salsugineum HOM05D003118 ORTHO05D003618 5.4e-49 198.7 167 64.7
AL1G19340 Arabidopsis lyrata HOM05D003118 ORTHO05D003618 3.5e-48 196.1 192 57.3
CARHR008810 Cardamine hirsuta HOM05D003118 ORTHO05D003618 3.5e-48 196.1 195 55.9
AT1G08910 Arabidopsis thaliana HOM05D003118 ORTHO05D003618 4.6e-48 195.7 192 55.7
Carub.0001s0824 Capsella rubella HOM05D003118 ORTHO05D003618 1.6e-45 187.2 188 54.3
Aa31sc17G150 Aethionema arabicum HOM05D003118 ORTHO05D003618 5.2e-44 182.2 187 53.5
BcaB02g07884 Brassica carinata HOM05D003118 ORTHO05D003618 7.1e-41 171.8 192 50.0
A04p14690 Brassica napus HOM05D003118 ORTHO05D003618 1.6e-40 170.6 192 52.1
BcaC02g08950 Brassica carinata HOM05D003118 ORTHO05D003618 7.8e-40 168.3 174 53.4
C04p48560 Brassica napus HOM05D003118 ORTHO05D003618 7.8e-40 168.3 174 53.4
BolC4t26449H Brassica oleracea HOM05D003118 ORTHO05D003618 7.8e-40 168.3 174 53.4
Sp7g00460 Schrenkiella parvula HOM05D003118 ORTHO05D003618 1.0e-39 167.9 192 48.4
BraA04t17109Z Brassica rapa HOM05D003118 ORTHO05D003618 1.3e-39 167.5 192 50.5
BcaB06g27629 Brassica carinata HOM05D003118 ORTHO05D003618 1.7e-39 167.2 182 52.2
BcaC08g44538 Brassica carinata HOM05D003118 ORTHO05D003618 6.6e-39 165.2 192 48.4
C06p20020 Brassica napus HOM05D003118 ORTHO05D003618 6.6e-39 165.2 192 48.4
A07p20860 Brassica napus HOM05D003118 ORTHO05D003618 1.5e-38 164.1 192 48.4
BraA07t29773Z Brassica rapa HOM05D003118 ORTHO05D003618 1.5e-38 164.1 192 48.4
Thhalv10027658m.g Eutrema salsugineum HOM05D003118 ORTHO05D003618 1.5e-38 164.1 192 49.0
Sp1g07530 Schrenkiella parvula HOM05D003118 ORTHO05D003618 5.6e-38 162.2 241 42.3
Carub.0007s3389 Capsella rubella HOM05D003118 ORTHO05D003618 7.3e-38 161.8 174 52.9
AL7G47820 Arabidopsis lyrata HOM05D003118 ORTHO05D003618 8.1e-37 158.3 173 51.4
AT5G41580 Arabidopsis thaliana HOM05D003118 ORTHO05D003618 3.1e-36 156.4 173 50.9
BolC6t37186H Brassica oleracea HOM05D003118 ORTHO05D003618 6.9e-36 155.2 208 44.7
arahy.Tifrunner.gnm1.ann1.9S2WM4 Arachis hypogaea HOM05D003118 ORTHO05D003618 2.0e-35 153.7 192 42.7
arahy.Tifrunner.gnm1.ann1.78DXCF Arachis hypogaea HOM05D003118 ORTHO05D003618 2.6e-35 153.3 192 42.2
RcHm_v2.0_Chr7g0196521 Rosa chinensis HOM05D003118 ORTHO05D003618 2.6e-35 153.3 192 42.2
CARHR287630 Cardamine hirsuta HOM05D003118 ORTHO05D003618 3.4e-35 152.9 173 49.7
Aa31LG9G490 Aethionema arabicum HOM05D003118 ORTHO05D003618 4.5e-35 152.5 177 49.2
THA.LOC104823601 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 5.8e-35 152.1 166 50.6
Thecc.03G287000 Theobroma cacao HOM05D003118 ORTHO05D003618 4.9e-34 149.1 192 43.8
Manes.02G016600 Manihot esculenta HOM05D003118 ORTHO05D003618 1.1e-33 147.9 171 45.6
FvH4_5g03250 Fragaria vesca HOM05D003118 ORTHO05D003618 1.4e-33 147.5 192 41.7
Lalb_Chr09g0320801 Lupinus albus HOM05D003118 ORTHO05D003618 1.9e-33 147.1 192 41.1
Duzib205G0707 Durio zibethinus HOM05D003118 ORTHO05D003618 3.2e-33 146.4 192 44.3
FAN13G0863 Fragaria x ananassa HOM05D003118 ORTHO05D003618 3.2e-33 146.4 192 41.1
Psat2g183920 Pisum sativum HOM05D003118 ORTHO05D003618 4.2e-33 146.0 179 45.3
FAN08G3653 Fragaria x ananassa HOM05D003118 ORTHO05D003618 9.3e-33 144.8 192 40.1
Actinidia28342 Actinidia chinensis HOM05D003118 ORTHO05D003618 1.2e-32 144.4 192 42.2
CiPaw.11G129400 Carya illinoinensis HOM05D003118 ORTHO05D003618 1.2e-32 144.4 188 43.1
COL.COLO4_08355 Corchorus olitorius HOM05D003118 ORTHO05D003618 1.6e-32 144.1 192 44.3
Eucgr.E00782 Eucalyptus grandis HOM05D003118 ORTHO05D003618 1.6e-32 144.1 169 46.2
QL02p033293 Quercus lobata HOM05D003118 ORTHO05D003618 1.6e-32 144.1 168 44.0
Gohir.D08G134400 Gossypium hirsutum HOM05D003118 ORTHO05D003618 3.5e-32 142.9 194 43.8
Gorai.004G137500 Gossypium raimondii HOM05D003118 ORTHO05D003618 3.5e-32 142.9 194 43.8
MBI07_g11721_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 6.0e-32 142.1 171 43.9
THA.LOC104809363 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 6.0e-32 142.1 167 49.7
Gohir.A08G114000 Gossypium hirsutum HOM05D003118 ORTHO05D003618 1.3e-31 141.0 194 41.8
Oeu042365.1 Olea europaea HOM05D003118 ORTHO05D003618 1.3e-31 141.0 188 39.9
SEGI_33305 Sequoiadendron giganteum HOM05D003118 ORTHO05D003618 1.7e-31 140.6 175 42.3
Ca_24533_v3 Cicer arietinum L. HOM05D003118 ORTHO05D003618 3.0e-31 139.8 192 40.6
LjContig00312_ERROPOS870357g0002156 Lotus japonicus HOM05D003118 ORTHO05D003618 3.0e-31 139.8 175 44.6
PSO063G6388 Papaver somniferum HOM05D003118 ORTHO05D003618 3.9e-31 139.4 193 40.9
PSO170G3062 Papaver somniferum HOM05D003118 ORTHO05D003618 3.9e-31 139.4 193 40.9
SGA_v2.0_scaffold144G35901 Striga asiatica HOM05D003118 ORTHO05D003618 5.1e-31 139.0 181 42.0
TPR.G6616 Trifolium pratense HOM05D003118 ORTHO05D003618 8.7e-31 138.3 192 38.5
Cc08_g15310 Coffea canephora HOM05D003118 ORTHO05D003618 1.5e-30 137.5 180 40.0
Sabra03G0095300 Salix brachista HOM05D003118 ORTHO05D003618 1.5e-30 137.5 192 39.1
CSS0022485 Camellia sinensis var. sinensis HOM05D003118 ORTHO05D003618 1.9e-30 137.1 190 41.6
Nn6g32462 Nelumbo nucifera HOM05D003118 ORTHO05D003618 1.9e-30 137.1 194 41.8
Potri.003G133000 Populus trichocarpa HOM05D003118 ORTHO05D003618 2.5e-30 136.7 192 39.6
PGR042G1679 Punica granatum HOM05D003118 ORTHO05D003618 3.3e-30 136.3 200 37.0
GSVIVG01019423001 Vitis vinifera HOM05D003118 ORTHO05D003618 4.3e-30 136.0 197 41.1
TWI14G1154 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 5.6e-30 135.6 193 40.9
TWI81G0015 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 5.6e-30 135.6 200 40.0
Aqoxy7G00197 Aquilegia oxysepala HOM05D003118 ORTHO05D003618 7.4e-30 135.2 175 40.6
SGA_v2.0_scaffold173G39132 Striga asiatica HOM05D003118 ORTHO05D003618 7.4e-30 135.2 199 38.7
Migut.E01210 Erythranthe guttata HOM05D003118 ORTHO05D003618 9.6e-30 134.8 183 41.5
CANSAT21G1093 Cannabis sativa HOM05D003118 ORTHO05D003618 1.3e-29 134.4 194 39.7
TAR629G1012 Trochodendron aralioides HOM05D003118 ORTHO05D003618 1.6e-29 134.0 188 40.4
Haze_08750 Corylus avellana HOM05D003118 ORTHO05D003618 2.1e-29 133.7 177 41.2
SHI07074 Sapria himalayana HOM05D003118 ORTHO05D003618 2.8e-29 133.3 195 39.0
MD06G1091800 Malus domestica HOM05D003118 ORTHO05D003618 4.8e-29 132.5 183 39.9
Dinv37591 Davidia involucrata HOM05D003118 ORTHO05D003618 6.2e-29 132.1 192 38.0
Dinv38896 Davidia involucrata HOM05D003118 ORTHO05D003618 1.1e-28 131.3 198 37.4
Glyma.01G222500 Glycine max HOM05D003118 ORTHO05D003618 1.1e-28 131.3 194 38.7
LjContig00312_ERROPOS870357g0013212 Lotus japonicus HOM05D003118 ORTHO05D003618 1.1e-28 131.3 183 38.8
MD14G1112600 Malus domestica HOM05D003118 ORTHO05D003618 1.1e-28 131.3 183 40.4
Cfa003868 Carpinus fangiana HOM05D003118 ORTHO05D003618 2.4e-28 130.2 171 38.0
TAR375G0293 Trochodendron aralioides HOM05D003118 ORTHO05D003618 2.4e-28 130.2 171 39.8
MSTRG.13862 Avicennia marina HOM05D003118 ORTHO05D003618 3.1e-28 129.8 192 38.0
CANSAT21G0202 Cannabis sativa HOM05D003118 ORTHO05D003618 5.3e-28 129.0 186 38.7
Medtr5g009920 Medicago truncatula HOM05D003118 ORTHO05D003618 5.3e-28 129.0 192 37.0
FAN04G2035 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.2e-27 127.9 192 37.5
FAN04G2118 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.2e-27 127.9 192 37.5
PSO266G0031 Papaver somniferum HOM05D003118 ORTHO05D003618 1.2e-27 127.9 195 36.4
Prupe.5G107000 Prunus persica HOM05D003118 ORTHO05D003618 1.2e-27 127.9 183 37.2
Glyma.11G020900 Glycine max HOM05D003118 ORTHO05D003618 1.5e-27 127.5 190 38.4
PSO384G4267 Papaver somniferum HOM05D003118 ORTHO05D003618 2.0e-27 127.1 195 36.4
Phvul.002G160400 Phaseolus vulgaris HOM05D003118 ORTHO05D003618 2.0e-27 127.1 189 38.1
VMungo1215G2430 Vigna mungo HOM05D003118 ORTHO05D003618 2.0e-27 127.1 188 38.8
Atru.chr9.2107 Acer truncatum HOM05D003118 ORTHO05D003618 2.6e-27 126.7 183 37.2
CiPaw.01G067900 Carya illinoinensis HOM05D003118 ORTHO05D003618 4.5e-27 125.9 171 39.2
TPR.G24280 Trifolium pratense HOM05D003118 ORTHO05D003618 4.5e-27 125.9 188 35.6
GSVIVG01026973001 Vitis vinifera HOM05D003118 ORTHO05D003618 5.8e-27 125.6 174 41.4
GSVIVG01026971001 Vitis vinifera HOM05D003118 ORTHO05D003618 1.3e-26 124.4 190 37.4
Hund11431 Selenicereus undatus HOM05D003118 ORTHO05D003618 1.7e-26 124.0 176 41.5
QL04p055623 Quercus lobata HOM05D003118 ORTHO05D003618 2.9e-26 123.2 188 36.2
SalBow8G1076 Salvia bowleyana HOM05D003118 ORTHO05D003618 2.9e-26 123.2 171 38.6
AUR62010758 Chenopodium quinoa HOM05D003118 ORTHO05D003618 6.4e-26 122.1 166 39.8
CsaV3_5G002370 Cucumis sativus L. HOM05D003118 ORTHO05D003618 6.4e-26 122.1 181 35.4
Sed0011553 Sechium edule HOM05D003118 ORTHO05D003618 8.4e-26 121.7 173 38.2
ECA246G2781 Erigeron canadensis HOM05D003118 ORTHO05D003618 1.1e-25 121.3 186 40.9
Sed0003885 Sechium edule HOM05D003118 ORTHO05D003618 1.1e-25 121.3 173 39.3
Peaxi162Scf00102g01644 Petunia axillaris HOM05D003118 ORTHO05D003618 1.4e-25 120.9 188 37.8
Haze_15568 Corylus avellana HOM05D003118 ORTHO05D003618 1.9e-25 120.6 159 38.4
Nitab4.5_0002231g0040 Nicotiana tabacum HOM05D003118 ORTHO05D003618 2.4e-25 120.2 188 36.7
Nitab4.5_0005339g0020 Nicotiana tabacum HOM05D003118 ORTHO05D003618 4.2e-25 119.4 188 36.2
CDE10G1109 Ceratophyllum demersum HOM05D003118 ORTHO05D003618 7.1e-25 118.6 181 35.9
Rhsim02G0236100 Rhododendron simsii HOM05D003118 ORTHO05D003618 7.1e-25 118.6 196 37.8
Solyc08g008130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 7.1e-25 118.6 199 35.7
HanXRQChr13g0416081 Helianthus annuus HOM05D003118 ORTHO05D003618 9.3e-25 118.2 200 37.0
HanXRQChr06g0166221 Helianthus annuus HOM05D003118 ORTHO05D003618 1.2e-24 117.9 179 39.7
Sopen08g003990 Solanum pennellii HOM05D003118 ORTHO05D003618 1.2e-24 117.9 199 35.2
Cfa012251 Carpinus fangiana HOM05D003118 ORTHO05D003618 4.6e-24 115.9 177 37.9
ECA240G3271 Erigeron canadensis HOM05D000115 ORTHO05D003618 6.0e-24 115.5 192 39.6
Hma1.2p1_0216F.1_g091120 Hydrangea macrophylla HOM05D003118 ORTHO05D003618 6.0e-24 115.5 192 35.9
Lsat_1_v5_gn_3_11501 Lactuca sativa HOM05D003118 ORTHO05D003618 6.0e-24 115.5 195 37.9
HanXRQChr17g0533861 Helianthus annuus HOM05D003118 ORTHO05D003618 7.9e-24 115.2 187 38.0
EL10Ac5g12842 Beta vulgaris HOM05D003118 ORTHO05D003618 1.0e-23 114.8 175 37.1
DCAR_004609 Daucus carota HOM05D003118 ORTHO05D003618 1.3e-23 114.4 177 35.6
TPR.G24909 Trifolium pratense HOM05D003118 ORTHO05D003618 1.8e-23 114.0 158 36.1
DCAR_000636 Daucus carota HOM05D003118 ORTHO05D003618 2.3e-23 113.6 177 37.9
Sc01g0009900 Simmondsia chinensis HOM05D003118 ORTHO05D003618 2.3e-23 113.6 158 38.0
HPP92_002895 Vanilla planifolia HOM05D003118 ORTHO05D003618 3.9e-23 112.8 168 35.7
Lsat_1_v5_gn_7_2680 Lactuca sativa HOM05D003118 ORTHO05D003618 5.1e-23 112.5 187 34.2
HPP92_002884 Vanilla planifolia HOM05D003118 ORTHO05D003618 5.1e-23 112.5 166 36.1
HPP92_000528 Vanilla planifolia HOM05D003118 ORTHO05D003618 1.9e-22 110.5 190 34.2
PSO266G0003 Papaver somniferum HOM05D003118 ORTHO05D003618 4.3e-22 109.4 170 35.3
Os06g0164000 Oryza sativa ssp. japonica HOM05D003118 ORTHO05D003618 9.6e-22 108.2 177 35.6
Lsat_1_v5_gn_6_84940 Lactuca sativa HOM05D003118 ORTHO05D003618 2.1e-21 107.1 190 35.8
MELO3C005717.2 Cucumis melo HOM05D003118 ORTHO05D003618 2.8e-21 106.7 183 35.0
AagrBONN_evm.TU.Sc2ySwM_228.3604 Anthoceros agrestis HOM05D003118 ORTHO05D003618 6.2e-21 105.5 181 35.4
Ciclev10024541m.g Citrus clementina HOM05D003118 ORTHO05D003618 6.2e-21 105.5 203 34.5
AUR62019759 Chenopodium quinoa HOM05D003118 ORTHO05D003618 2.4e-20 103.6 175 34.3
HanXRQChr04g0120811 Helianthus annuus HOM05D003118 ORTHO05D003618 2.4e-20 103.6 187 31.6
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 4.0e-20 102.8 179 35.8
Zm00001eb375680 Zea mays HOM05D003118 ORTHO05D003618 9.0e-20 101.7 185 31.4
ATR0721G124 Amborella trichopoda HOM05D003118 ORTHO05D003618 1.2e-19 101.3 107 51.4
Cc02_g38610 Coffea canephora HOM05D003118 ORTHO05D003618 1.2e-19 101.3 168 36.3
Medtr7g063200 Medicago truncatula HOM05D003118 ORTHO05D003618 1.0e-18 98.2 224 28.6
CiPaw.12G088800 Carya illinoinensis HOM05D003118 ORTHO05D003618 1.7e-18 97.4 198 32.8
Medtr8g447390 Medicago truncatula HOM05D003118 ORTHO05D003618 3.8e-18 96.3 152 34.2
vmacro11412 Vaccinium macrocarpon HOM05D003118 ORTHO05D003618 3.8e-18 96.3 192 34.9
Ah.12g052020 Amaranthus hybridus HOM05D003118 ORTHO05D003618 1.9e-17 94.0 175 32.0
ECA236G1529 Erigeron canadensis HOM05D003118 ORTHO05D003618 7.1e-17 92.0 166 29.5
FAN18G4078 Fragaria x ananassa HOM05D003118 ORTHO05D003618 6.7e-15 85.5 101 46.5
Hund14265 Selenicereus undatus HOM05D003118 ORTHO05D003618 1.5e-14 84.3 108 44.4
Solyc01g095130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 4.3e-14 82.8 183 31.7
ECA236G4268 Erigeron canadensis HOM05D003118 ORTHO05D003618 3.7e-13 79.7 166 29.5
FAN11G3379 Fragaria x ananassa HOM05D003118 ORTHO05D003618 2.4e-12 77.0 176 32.4
SMO116G0096 Selaginella moellendorffii HOM05D003118 ORTHO05D003898 1.2e-11 74.7 149 35.6
ClCG01G002310 Citrullus lanatus HOM05D003118 ORTHO05D003618 2.6e-11 73.6 184 27.2
Mapoly0002s0236 Marchantia polymorpha HOM05D003118 ORTHO05D003618 3.4e-11 73.2 233 24.5
Peaxi162Scf00020g01526 Petunia axillaris HOM05D003118 ORTHO05D003618 7.6e-11 72.0 180 28.3
Cpa.g.c33497.2 Carica papaya HOM05D003118 ORTHO05D003618 1.9e-09 67.4 54 57.4
Nitab4.5_0000915g0080 Nicotiana tabacum HOM05D003118 ORTHO05D003618 4.2e-09 66.2 181 26.5
Sopen01g038920 Solanum pennellii HOM05D003118 ORTHO05D003618 7.2e-09 65.5 229 26.2
Haze_08746 Corylus avellana HOM05D003118 ORTHO05D003618 1.2e-08 64.7 62 50.0
FAN11G3071 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.0e-07 61.6 83 41.0
MBI18_g41292_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 1.0e-07 61.6 69 47.8
MBI01_g15047_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 1.9e-06 57.4 62 48.4
HanXRQChr11g0344401 Helianthus annuus HOM05D003118 ORTHO05D003618 2.5e-06 57.0 108 26.9


User provided reference genes

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