Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p06340 Brassica napus HOM05D007518 ORTHO05D008168 2.0e-59 232.6 159 100.0
BolC5t29390H Brassica oleracea HOM05D007518 ORTHO05D008168 2.5e-57 225.7 159 98.1
A06p05270 Brassica napus HOM05D007518 ORTHO05D008168 1.4e-55 219.9 159 96.2
BraA06t23735Z Brassica rapa HOM05D007518 ORTHO05D008168 1.4e-55 219.9 159 96.2
Thhalv10010782m.g Eutrema salsugineum HOM05D007518 ORTHO05D008168 1.2e-51 206.8 159 91.8
Sp5g11540 Schrenkiella parvula HOM05D007518 ORTHO05D008168 5.0e-50 201.4 159 89.3
AL5G30840 Arabidopsis lyrata HOM05D007518 ORTHO05D008168 4.7e-48 194.9 159 87.4
AT3G50685 Arabidopsis thaliana HOM05D007518 ORTHO05D008168 6.2e-48 194.5 159 87.4
Carub.0005s1701 Capsella rubella HOM05D007518 ORTHO05D008168 8.0e-48 194.1 160 86.9
BcaB07g34066 Brassica carinata HOM05D007518 ORTHO05D008168 1.9e-44 183.0 157 75.2
Aa31LG4G18840 Aethionema arabicum HOM05D007518 ORTHO05D008168 3.5e-43 178.7 159 84.3
CARHR160200 Cardamine hirsuta HOM05D007518 ORTHO05D008168 1.7e-42 176.4 159 83.0
BcaB07g34065 Brassica carinata HOM05D007518 ORTHO05D008168 4.7e-40 168.3 95 91.6
THA.LOC104821280 Tarenaya hassleriana HOM05D007518 ORTHO05D008168 2.6e-38 162.5 159 77.4
arahy.Tifrunner.gnm1.ann1.5UMV3I Arachis hypogaea HOM05D007518 ORTHO05D008168 7.8e-35 151.0 164 74.4
arahy.Tifrunner.gnm1.ann1.RRU65L Arachis hypogaea HOM05D007518 ORTHO05D008168 1.0e-34 150.6 164 73.8
Gohir.D03G015500 Gossypium hirsutum HOM05D007518 ORTHO05D008168 1.0e-34 150.6 163 73.0
Gorai.003G015700 Gossypium raimondii HOM05D007518 ORTHO05D008168 1.7e-34 149.8 163 73.0
Gohir.A02G164600 Gossypium hirsutum HOM05D007518 ORTHO05D008168 3.0e-34 149.1 163 73.0
TWI53G0381 Tripterygium wilfordii HOM05D007518 ORTHO05D008168 8.6e-34 147.5 165 70.9
Sabra07G0023900 Salix brachista HOM05D007518 ORTHO05D008168 1.1e-33 147.1 164 72.6
Cfa004294 Carpinus fangiana HOM05D007518 ORTHO05D008168 1.5e-33 146.7 167 71.9
MD02G1150400 Malus domestica HOM05D007518 ORTHO05D008168 1.9e-33 146.4 166 71.7
Glyma.11G067100 Glycine max HOM05D007518 ORTHO05D008168 3.3e-33 145.6 167 72.5
MD15G1264900 Malus domestica HOM05D007518 ORTHO05D008168 5.6e-33 144.8 167 71.3
TAR628G0256 Trochodendron aralioides HOM05D007518 ORTHO05D008168 9.5e-33 144.1 164 70.7
Haze_15107 Corylus avellana HOM05D007518 ORTHO05D008168 1.2e-32 143.7 167 71.3
CsaV3_6G046170 Cucumis sativus L. HOM05D007518 ORTHO05D008168 1.6e-32 143.3 162 72.2
CiPaw.02G016200 Carya illinoinensis HOM05D007518 ORTHO05D008168 2.1e-32 142.9 168 71.4
Prupe.7G152700 Prunus persica HOM05D007518 ORTHO05D008168 3.6e-32 142.1 168 70.8
Thecc.01G037800 Theobroma cacao HOM05D007518 ORTHO05D008168 3.6e-32 142.1 164 71.3
Nn1g05049 Nelumbo nucifera HOM05D007518 ORTHO05D008168 4.7e-32 141.7 164 71.3
QL06p045656 Quercus lobata HOM05D007518 ORTHO05D008168 4.7e-32 141.7 162 70.4
Rhsim10G0067800 Rhododendron simsii HOM05D007518 ORTHO05D008168 4.7e-32 141.7 167 71.9
MBI16_g37747_MAGBIO Magnolia biondii HOM05D007518 ORTHO05D008168 6.2e-32 141.4 165 73.3
VMungo1215G2461 Vigna mungo HOM05D007518 ORTHO05D008168 6.2e-32 141.4 166 67.5
MELO3C007820.2 Cucumis melo HOM05D007518 ORTHO05D008168 1.1e-31 140.6 162 71.0
CANSAT01G2215 Cannabis sativa HOM05D007518 ORTHO05D008168 2.3e-31 139.4 165 71.5
CSS0014655 Camellia sinensis var. sinensis HOM05D007518 ORTHO05D008168 4.0e-31 138.7 163 71.8
CAN.G1028.6 Capsicum annuum HOM05D007518 ORTHO05D008168 4.0e-31 138.7 134 79.1
AUR62003171 Chenopodium quinoa HOM05D007518 ORTHO05D008168 4.0e-31 138.7 165 70.9
Lalb_Chr09g0322501 Lupinus albus HOM05D007518 ORTHO05D008168 4.0e-31 138.7 162 70.4
COL.COLO4_22099 Corchorus olitorius HOM05D007518 ORTHO05D008168 5.2e-31 138.3 166 70.5
PGR119G2546 Punica granatum HOM05D007518 ORTHO05D008168 1.2e-30 137.1 164 68.9
Atru.chr3.555 Acer truncatum HOM05D007518 ORTHO05D008168 1.5e-30 136.7 167 68.3
Cfa004293 Carpinus fangiana HOM05D007518 ORTHO05D008168 1.5e-30 136.7 161 70.8
Phvul.002G029100 Phaseolus vulgaris HOM05D007518 ORTHO05D008168 1.5e-30 136.7 166 66.9
Lj2g0015504 Lotus japonicus HOM05D007518 ORTHO05D008168 2.6e-30 136.0 162 69.8
Potri.007G027400 Populus trichocarpa HOM05D007518 ORTHO05D008168 2.6e-30 136.0 167 69.5
AUR62007988 Chenopodium quinoa HOM05D006571 ORTHO05D007771 4.4e-30 135.2 133 81.2
Migut.L00282 Erythranthe guttata HOM05D007518 ORTHO05D008168 4.4e-30 135.2 161 67.7
FAN28G1656 Fragaria x ananassa HOM05D007518 ORTHO05D008168 4.4e-30 135.2 166 70.5
Medtr5g019920 Medicago truncatula HOM05D007518 ORTHO05D008168 5.8e-30 134.8 164 68.9
RcHm_v2.0_Chr2g0101891 Rosa chinensis HOM05D007518 ORTHO05D008168 7.6e-30 134.4 165 70.3
Aqoxy6G01075 Aquilegia oxysepala HOM05D007518 ORTHO05D008168 9.9e-30 134.0 163 69.9
FvH4_1g13510 Fragaria vesca HOM05D007518 ORTHO05D008168 9.9e-30 134.0 166 69.9
FAN19G2612 Fragaria x ananassa HOM05D007518 ORTHO05D008168 9.9e-30 134.0 166 69.9
PGSC0003DMG400017778 Solanum tuberosum HOM05D007518 ORTHO05D008168 9.9e-30 134.0 136 77.2
Manes.01G134000 Manihot esculenta HOM05D007518 ORTHO05D008168 1.3e-29 133.7 168 67.3
Nitab4.5_0016476g0010 Nicotiana tabacum HOM05D007518 ORTHO05D008168 1.7e-29 133.3 125 82.4
Eucgr.I02457 Eucalyptus grandis HOM05D007518 ORTHO05D008168 2.9e-29 132.5 168 69.6
Solyc03g034070.1 Solanum lycopersicum HOM05D007518 ORTHO05D008168 2.9e-29 132.5 122 82.8
Sopen03g006850 Solanum pennellii HOM05D007518 ORTHO05D008168 2.9e-29 132.5 122 82.8
TPR.G28676 Trifolium pratense HOM05D007518 ORTHO05D008168 1.1e-28 130.6 163 68.1
Cc07_g09360 Coffea canephora HOM05D007518 ORTHO05D008168 1.4e-28 130.2 131 78.6
Sc03g0000780 Simmondsia chinensis HOM05D007518 ORTHO05D008168 2.4e-28 129.4 153 69.3
PSO541G1957 Papaver somniferum HOM05D007518 ORTHO05D008168 3.2e-28 129.0 132 76.5
PSO675G1394 Papaver somniferum HOM05D007518 ORTHO05D008168 3.2e-28 129.0 132 76.5
Ciclev10026615m.g Citrus clementina HOM05D007518 ORTHO05D008168 7.1e-28 127.9 130 77.7
Sed0026205 Sechium edule HOM05D007518 ORTHO05D008168 7.1e-28 127.9 131 77.1
Ah.03g139360 Amaranthus hybridus HOM05D007518 ORTHO05D008168 9.2e-28 127.5 157 69.4
DCAR_021444 Daucus carota HOM05D007518 ORTHO05D008168 1.2e-27 127.1 141 73.8
Lsat_1_v5_gn_3_78660 Lactuca sativa HOM05D007518 ORTHO05D008168 3.5e-27 125.6 169 67.5
Oeu007443.1 Olea europaea HOM05D007518 ORTHO05D008168 4.6e-27 125.2 165 67.9
Mapoly0168s0019 Marchantia polymorpha HOM05D007518 ORTHO05D008168 6.0e-27 124.8 130 79.2
HanXRQChr16g0530261 Helianthus annuus HOM05D007518 ORTHO05D008168 7.8e-27 124.4 135 77.0
Nitab4.5_0001038g0130 Nicotiana tabacum HOM05D007518 ORTHO05D008168 3.9e-26 122.1 125 78.4
Pp3c15_7720 Physcomitrium patens HOM05D007518 ORTHO05D008168 3.9e-26 122.1 158 63.3
Lj2P450T11 Lonicera japonica HOM05D007518 ORTHO05D008168 2.5e-25 119.4 129 79.1
Ca_00386_v3 Cicer arietinum L. HOM05D007518 ORTHO05D008168 4.3e-25 118.6 126 60.3
SGA_v2.0_scaffold248G44914 Striga asiatica HOM05D007518 ORTHO05D008168 5.6e-25 118.2 159 64.8
unitig_62.g23458 Utricularia gibba HOM05D007518 ORTHO05D008168 1.6e-24 116.7 127 74.8
ATR0733G025 Amborella trichopoda HOM05D007518 ORTHO05D008168 4.7e-24 115.2 122 77.9
Duzib187G0536 Durio zibethinus HOM05D007518 ORTHO05D008168 1.4e-23 113.6 99 62.6
Peaxi162Scf00751g00045 Petunia axillaris HOM05D007518 ORTHO05D008168 1.4e-23 113.6 125 62.4
ECA246G0481 Erigeron canadensis HOM05D000085 ORTHO05D000274 1.2e-22 110.5 145 71.7
SEGI_19868 Sequoiadendron giganteum HOM05D007518 ORTHO05D008168 1.2e-22 110.5 157 63.7
SMO361G0359 Selaginella moellendorffii HOM05D007518 ORTHO05D008168 9.9e-22 107.5 113 75.2
Actinidia12117 Actinidia chinensis HOM05D007518 ORTHO05D008168 1.7e-21 106.7 102 62.7
CBR_g37409 Chara braunii HOM05D007518 ORTHO05D008168 2.2e-21 106.3 129 44.2
Dinv26823 Davidia involucrata HOM05D002420 ORTHO05D002422 6.4e-21 104.8 155 63.9
Psat2g160680 Pisum sativum HOM05D007518 ORTHO05D008168 6.4e-21 104.8 122 74.6
HPP92_023606 Vanilla planifolia HOM05D007518 ORTHO05D008168 1.0e-18 97.4 133 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2926 Anthoceros agrestis HOM05D007518 ORTHO05D008168 2.8e-16 89.4 120 70.8
Zm00001eb098970 Zea mays HOM05D007518 ORTHO05D008168 4.0e-15 85.5 148 63.5
Actinidia02774 Actinidia chinensis HOM05D007518 ORTHO05D008168 3.4e-14 82.4 127 44.9
unitig_65.g29889 Utricularia gibba HOM05D007518 ORTHO05D008168 6.4e-13 78.2 89 69.7
SMO361G0415 Selaginella moellendorffii HOM05D007518 ORTHO05D008168 8.4e-13 77.8 100 41.0
PRCOL_00004191 Prasinoderma coloniale HOM05D007518 ORTHO05D008168 7.1e-12 74.7 122 62.3
Os10g0213700 Oryza sativa ssp. japonica HOM05D007518 ORTHO05D008168 8.7e-10 67.8 131 62.6
Cre01.g043200 Chlamydomonas reinhardtii HOM05D007518 ORTHO05D008168 1.1e-09 67.4 69 53.6
MCO12G314 Micromonas commoda HOM05D007518 ORTHO05D008168 2.5e-09 66.2 59 55.9
Atru.chr4.788 Acer truncatum HOM05D007518 ORTHO05D008168 4.5e-06 55.5 33 81.8


User provided reference genes

Program Settings