Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 0.0e+00 1328.9 687 100.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 0.0e+00 1324.7 687 99.4
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 0.0e+00 1274.6 687 95.6
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 0.0e+00 1264.2 687 94.9
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 0.0e+00 1201.4 671 93.0
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 0.0e+00 1184.9 668 92.8
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 0.0e+00 1167.9 694 87.5
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 0.0e+00 1166.8 691 87.3
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 0.0e+00 1147.9 692 85.8
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 0.0e+00 1144.0 695 85.8
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 0.0e+00 1133.2 692 86.0
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.0e-305 1052.0 690 79.3
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 3.0e-285 984.9 693 73.7
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 1.6e-249 866.3 603 76.0
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 4.3e-231 805.1 682 62.9
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 1.1e-229 800.4 688 62.4
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 2.4e-229 799.3 683 62.8
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 2.0e-228 796.2 687 61.0
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 2.9e-227 792.3 682 62.0
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 4.2e-226 788.5 685 62.2
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 2.7e-225 785.8 681 61.5
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 3.9e-224 781.9 726 59.0
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 6.6e-224 781.2 684 61.7
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 9.6e-223 777.3 683 59.9
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 2.1e-222 776.2 682 60.9
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.1e-222 776.2 683 59.9
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 4.8e-222 775.0 683 60.3
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.1e-221 773.9 683 59.6
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 3.1e-221 772.3 597 67.0
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 9.9e-220 767.3 699 60.4
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 3.8e-219 765.4 677 59.8
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 8.4e-219 764.2 679 60.8
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.2e-218 762.3 683 59.6
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.6e-217 760.0 686 59.5
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.0e-216 755.7 677 59.8
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 3.0e-216 755.7 681 61.1
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 3.3e-215 752.3 684 58.9
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.1e-213 747.3 699 59.4
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 5.3e-213 745.0 683 58.1
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 9.0e-213 744.2 677 60.1
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.6e-212 742.7 677 59.5
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.6e-209 733.4 680 57.2
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 1.3e-208 730.3 680 58.1
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 3.0e-208 729.2 680 57.8
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.1e-207 727.2 688 57.8
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 1.9e-207 726.5 700 56.1
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 2.5e-207 726.1 690 58.1
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 7.4e-207 724.5 691 57.2
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 4.8e-206 721.8 679 57.6
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 9.0e-205 717.6 715 54.8
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.2e-204 717.2 689 57.0
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 5.8e-204 714.9 683 57.2
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.3e-203 713.8 709 56.4
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 1.7e-203 713.4 670 56.3
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 3.8e-203 712.2 682 57.5
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 1.1e-202 710.7 675 57.2
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 1.4e-202 710.3 686 57.0
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 4.2e-202 708.8 680 57.2
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 9.3e-202 707.6 689 54.6
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 9.3e-202 707.6 678 56.6
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 7.9e-201 704.5 687 55.2
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 1.3e-200 703.7 707 55.9
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.8e-200 703.4 678 57.2
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 2.3e-200 703.0 678 56.9
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 2.3e-200 703.0 682 55.7
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 1.1e-199 700.7 682 55.9
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.9e-199 699.9 684 55.6
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 1.4e-197 693.7 686 56.9
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.2e-196 690.6 675 56.3
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.2e-196 690.6 730 52.9
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 3.8e-195 685.6 672 54.9
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 3.8e-195 685.6 692 56.9
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 8.5e-195 684.5 682 54.1
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.5e-191 673.7 663 55.7
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 2.4e-189 666.4 491 68.6
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 3.1e-189 666.0 683 54.9
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 4.5e-188 662.1 678 53.1
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 5.0e-187 658.7 640 56.1
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 2.6e-180 636.3 687 52.4
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 4.5e-180 635.6 603 56.9
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.0e-179 634.4 689 51.7
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 2.2e-179 633.3 639 55.1
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 8.0e-177 624.8 611 57.4
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.5e-175 620.5 682 52.2
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 6.3e-174 615.1 685 52.0
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 8.2e-174 614.8 610 55.9
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.3e-171 607.4 686 50.1
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 2.9e-171 606.3 641 53.7
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 4.0e-168 595.9 711 48.5
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 3.4e-167 592.8 618 53.1
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 2.4e-165 586.6 676 49.7
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 5.9e-164 582.0 584 55.5
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 2.7e-156 556.6 642 50.2
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.2e-140 504.6 671 46.5
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 3.0e-139 500.0 356 69.9
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.7e-126 457.6 706 43.5
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.7e-126 457.6 622 44.4
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 3.9e-123 446.4 481 48.9
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 1.6e-121 441.0 708 41.4
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.0e-115 420.2 303 67.3
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 3.4e-103 380.2 285 64.2
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 5.3e-64 250.0 221 57.0
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 7.2e-45 186.4 303 44.9
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.2e-32 144.4 96 70.8
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.8e-31 139.8 96 68.8
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.6e-29 133.7 96 66.7
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.2e-28 132.5 92 67.4
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 4.4e-26 124.0 461 28.4
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.9e-21 108.6 76 64.5
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.6e-20 105.5 76 64.5
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 6.8e-19 100.1 182 38.5
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 1.6e-15 89.0 333 25.5
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 9.5e-13 79.7 47 76.6
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.6e-10 71.6 68 48.5
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.5e-07 61.2 51 51.0
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 2.3e-06 58.5 45 75.6


User provided reference genes

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