Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1733.4 921 100.0
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1703.0 921 98.4
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1702.2 922 98.5
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1684.1 921 97.8
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1652.5 921 96.0
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1583.9 921 92.1
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1563.5 923 91.0
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1544.6 923 90.0
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1530.0 921 89.1
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1509.2 921 88.4
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1496.1 944 86.2
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1496.1 921 87.4
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1489.9 919 86.0
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1442.2 922 85.1
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1440.6 934 84.2
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1364.4 922 78.9
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1169.5 921 68.2
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1169.1 921 66.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1168.3 925 67.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1166.4 920 66.6
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1157.9 921 67.8
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1149.4 921 66.8
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1147.5 917 64.7
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1147.5 921 66.4
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1146.7 925 63.7
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1145.2 923 64.0
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1143.3 921 66.2
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1141.3 959 64.1
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1140.2 996 61.2
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1138.3 924 65.9
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1134.0 916 65.5
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1132.5 922 65.4
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1131.7 922 64.2
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1130.2 922 65.6
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1130.2 922 65.8
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1125.9 929 65.3
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1125.2 924 64.4
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1122.5 916 66.4
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1122.5 922 65.5
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1121.3 921 64.5
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1118.2 924 63.4
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1111.3 928 64.1
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1109.0 912 63.2
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1103.2 921 63.3
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1099.3 934 62.6
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1097.8 915 63.0
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1095.9 931 60.7
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1092.0 924 62.1
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1090.9 935 62.2
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1087.4 920 61.2
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1085.1 855 65.4
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1082.8 935 62.1
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1082.4 914 62.9
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1081.2 925 61.1
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1077.8 944 62.9
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1075.1 932 61.4
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 5.7e-311 1070.8 920 61.5
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 1.2e-308 1063.1 917 59.9
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 7.6e-308 1060.4 925 59.2
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 1.2e-305 1053.1 1072 55.1
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 5.6e-303 1044.3 910 59.9
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 3.7e-302 1041.6 911 59.6
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 8.1e-302 1040.4 878 62.3
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 1.5e-300 1036.2 962 56.2
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 1.3e-296 1023.1 865 61.3
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.9e-296 1021.5 1088 53.2
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 2.5e-295 1018.8 914 59.0
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 2.4e-293 1012.3 927 59.0
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 3.1e-293 1011.9 909 59.7
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 4.5e-292 1008.1 877 59.9
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 8.5e-291 1003.8 990 57.3
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.9e-282 976.1 589 91.2
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 5.5e-282 974.5 922 55.9
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 7.2e-282 974.2 927 58.6
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 8.2e-278 960.7 920 55.5
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 5.9e-276 954.5 772 65.0
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.4e-274 949.9 906 57.2
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 9.1e-269 930.6 927 56.3
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.5e-266 923.3 879 56.2
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.2e-263 913.7 866 56.2
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 3.3e-263 912.1 922 53.3
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.1e-261 907.1 765 61.3
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.0e-260 902.9 926 54.5
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 7.7e-260 901.0 1011 50.8
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.4e-253 880.2 905 53.9
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 6.5e-251 871.3 939 51.0
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.5e-250 869.4 722 63.7
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 4.4e-247 858.6 731 65.1
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 4.1e-245 852.0 635 73.2
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 4.5e-244 848.6 1146 43.9
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 9.2e-237 824.3 933 50.2
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 1.8e-232 810.1 441 100.0
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 3.1e-232 809.3 920 49.7
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 5.8e-231 805.1 732 57.7
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 8.6e-227 791.2 783 54.4
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 8.3e-222 774.6 647 61.2
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 4.3e-210 735.7 605 62.3
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.6e-185 654.1 530 64.0
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 3.2e-181 639.8 577 57.5
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.2e-164 584.7 424 70.3
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.0e-158 565.1 491 60.7
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 6.7e-155 552.4 911 38.7
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-154 551.2 512 59.8
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 4.4e-146 523.1 917 40.8
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.6e-138 497.3 465 58.9
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.8e-131 474.6 916 35.4
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 3.4e-130 470.3 901 35.7
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 2.0e-127 461.1 411 58.4
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.2e-124 451.8 605 43.8
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 2.8e-116 424.1 919 33.1
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 1.2e-114 418.7 296 75.3
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 5.8e-106 389.8 640 39.5
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.9e-94 350.5 682 37.8
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-89 334.0 567 39.0
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 5.4e-88 330.1 355 50.7
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.6e-84 318.5 238 73.1
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 4.3e-77 293.9 277 56.0
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 7.4e-77 293.1 228 66.2
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 2.1e-71 275.0 284 56.3
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 2.5e-69 268.1 213 75.6
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 4.5e-66 257.3 598 35.5
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.1e-56 226.1 151 70.2
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 7.2e-56 223.4 118 100.0
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 4.1e-43 181.0 148 63.5
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.3e-41 176.0 121 71.1
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 2.3e-38 165.2 264 40.2
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 7.0e-35 153.7 98 78.6
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 2.6e-29 135.2 227 37.4
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.3e-28 132.9 196 36.7
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.0e-21 109.0 145 44.8
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.4e-19 102.1 120 46.7
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.9e-17 95.1 105 47.6
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 5.0e-17 94.4 163 35.0
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 6.6e-17 94.0 82 63.4
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.5e-16 92.0 75 56.0
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 5.5e-16 90.9 100 56.0
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 8.0e-15 87.0 58 65.5
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 8.9e-14 83.6 137 35.8
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 2.2e-12 79.0 186 29.6
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 6.6e-09 67.4 130 39.2
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 8.6e-09 67.0 140 39.3
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 1.9e-08 65.9 1007 20.7
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.9e-08 65.9 64 46.9
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 2.5e-08 65.5 65 52.3
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 4.3e-08 64.7 113 32.7
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 2.1e-07 62.4 75 53.3


User provided reference genes

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