Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 4.0e-93 345.5 294 100.0
BraA10t42785Z Brassica rapa HOM05D006785 ORTHO05D006259 1.1e-53 214.5 320 74.7
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 7.1e-50 201.8 326 44.2
BolC5t29251H Brassica oleracea HOM05D006785 ORTHO05D006259 4.6e-49 199.1 294 78.2
BcaB02g06783 Brassica carinata HOM05D006785 ORTHO05D006259 6.0e-49 198.7 325 69.2
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 1.3e-46 191.0 326 43.9
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 9.0e-37 158.3 321 55.1
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 5.9e-36 155.6 327 48.0
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 1.2e-28 131.3 325 41.8
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 1.2e-28 131.3 326 50.6
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 1.3e-27 127.9 243 58.0
A10p05180 Brassica napus HOM05D006785 ORTHO05D006259 6.3e-22 109.0 320 58.4
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 3.1e-21 106.7 316 41.1
Aa31LG1G7630 Aethionema arabicum HOM05D006785 ORTHO05D006259 2.7e-17 93.6 142 49.3
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 1.4e-16 91.3 181 34.8
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 2.4e-13 80.5 147 52.4
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 3.5e-12 76.6 217 43.3
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 4.5e-12 76.3 178 36.5
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 2.9e-11 73.6 221 42.1
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 3.8e-11 73.2 217 43.3
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 5.0e-11 72.8 224 41.1
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 5.0e-11 72.8 147 55.8
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 6.5e-11 72.4 145 33.8
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 8.5e-11 72.0 181 47.0
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 1.1e-10 71.6 196 33.7
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 1.1e-10 71.6 141 41.8
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 5.5e-10 69.3 184 42.9
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 9.4e-10 68.6 161 43.5
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 9.4e-10 68.6 180 45.6
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 2.7e-09 67.0 174 31.0
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 4.7e-09 66.2 223 38.1
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 8.0e-09 65.5 181 44.8
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 1.4e-08 64.7 214 41.6
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 3.0e-08 63.5 190 46.3
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 6.7e-08 62.4 143 49.7
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.2e-07 61.6 208 41.8
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.6e-07 60.5 208 41.3
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 4.4e-07 59.7 219 37.4
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 7.5e-07 58.9 198 38.9
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 7.5e-07 58.9 136 50.0
BraA07t30085Z Brassica rapa HOM05D006785 ORTHO05D023842 9.7e-07 58.5 164 44.5
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 9.7e-07 58.5 125 44.8
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 1.3e-06 58.2 132 33.3
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 1.3e-06 58.2 132 33.3
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.3e-06 58.2 198 39.9
MBI10_g42732_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 1.3e-06 58.2 104 37.5
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 1.3e-06 58.2 141 45.4
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 1.7e-06 57.8 147 48.3
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 2.2e-06 57.4 198 39.4
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 2.8e-06 57.0 134 33.6
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 3.7e-06 56.6 189 43.9
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 4.8e-06 56.2 199 39.7
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 4.8e-06 56.2 196 27.0
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 4.8e-06 56.2 144 43.1
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 8.2e-06 55.5 212 28.8


User provided reference genes

Program Settings