Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.3e-254 882.5 435 100.0
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.3e-254 882.5 435 100.0
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.3e-254 882.5 435 100.0
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 7.0e-203 710.7 438 80.6
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 5.9e-202 707.6 436 84.2
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 2.3e-185 652.5 436 78.4
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.2e-183 646.7 442 75.3
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 6.6e-177 624.4 441 72.6
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 6.6e-177 624.4 441 72.6
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 9.5e-176 620.5 442 72.2
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 5.2e-174 614.8 443 71.8
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 5.2e-174 614.8 442 71.9
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 2.0e-173 612.8 442 70.6
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 2.9e-172 609.0 438 71.2
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 2.9e-172 609.0 438 71.2
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 1.4e-171 606.7 439 70.4
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 4.4e-157 558.5 457 64.3
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.6e-146 523.5 445 60.7
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.5e-136 490.3 445 56.4
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 6.2e-135 485.0 446 57.2
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 6.9e-134 481.5 445 55.7
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 8.4e-132 474.6 445 54.6
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 4.6e-130 468.8 446 54.9
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 6.0e-130 468.4 445 53.9
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.8e-129 466.8 444 53.4
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.8e-129 466.8 445 54.4
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.1e-129 465.3 445 54.6
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.1e-128 464.2 445 54.6
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 1.5e-128 463.8 451 54.8
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 3.3e-128 462.6 445 52.6
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 7.4e-128 461.5 444 54.7
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 2.1e-127 459.9 445 52.6
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 3.7e-127 459.1 447 54.6
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.2e-127 458.4 445 53.9
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 8.2e-127 458.0 446 53.6
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 1.4e-126 457.2 428 55.8
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.4e-126 457.2 445 52.6
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 3.1e-126 456.1 478 51.0
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.0e-126 455.7 445 54.2
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 4.0e-126 455.7 447 53.7
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.5e-125 453.8 437 52.2
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.5e-125 453.8 445 52.6
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 7.6e-125 451.4 445 51.5
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 1.0e-124 451.1 445 52.4
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.0e-124 451.1 447 52.1
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 2.2e-124 449.9 445 51.5
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.9e-124 449.5 437 52.4
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.9e-124 449.5 437 51.9
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 2.9e-124 449.5 445 51.9
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.8e-124 449.1 444 53.4
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 4.9e-124 448.7 445 50.8
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 4.9e-124 448.7 446 52.9
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 6.5e-124 448.4 447 50.8
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 6.5e-124 448.4 445 53.3
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 8.4e-124 448.0 443 53.0
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.1e-123 447.6 445 53.0
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.9e-123 446.8 445 53.3
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.9e-123 446.8 441 52.4
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.2e-123 445.7 445 53.5
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 4.2e-123 445.7 457 50.3
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 6.1e-122 441.8 445 51.9
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 6.1e-122 441.8 445 52.4
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.1e-122 441.8 441 51.2
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 1.8e-121 440.3 447 51.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.7e-121 438.3 445 52.1
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.1e-120 437.6 445 51.2
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.5e-120 437.2 445 52.6
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.5e-120 437.2 491 48.9
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.9e-120 436.8 447 49.2
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 5.7e-120 435.3 445 51.2
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 6.3e-119 431.8 447 50.6
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.1e-118 431.0 444 50.7
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.4e-118 430.6 445 51.7
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 3.1e-118 429.5 445 49.7
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.2e-117 427.6 444 50.2
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.5e-117 427.2 448 50.2
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 7.7e-117 424.9 444 50.2
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.3e-116 424.1 446 50.7
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 5.0e-116 422.2 445 49.2
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 8.5e-116 421.4 441 49.9
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.1e-115 421.0 446 49.1
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 1.9e-115 420.2 435 51.5
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 4.2e-115 419.1 418 53.1
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 3.6e-114 416.0 419 51.6
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.6e-114 415.6 441 49.7
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 4.3e-112 409.1 446 48.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 7.4e-112 408.3 442 50.9
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.8e-110 403.7 441 48.5
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.2e-109 401.0 448 48.0
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 2.6e-109 399.8 384 54.9
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 8.5e-108 394.8 417 51.1
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.4e-107 394.0 364 57.7
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.9e-107 393.7 448 48.2
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 3.0e-105 386.3 441 48.3
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 2.6e-104 383.3 403 51.9
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.2e-103 380.2 380 53.2
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 3.1e-102 376.3 444 46.2
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 3.1e-102 376.3 442 47.7
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.3e-100 370.9 366 53.0
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 6.5e-100 368.6 441 46.9
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 5.5e-99 365.5 443 43.6
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.1e-98 363.6 383 48.6
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 6.1e-98 362.1 381 47.5
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.0e-97 361.3 381 48.8
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.2e-95 353.6 438 46.3
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 7.0e-94 348.6 438 45.4
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.2e-93 347.8 437 44.9
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.6e-93 346.7 445 44.3
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 5.0e-92 342.4 409 46.5
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.4e-89 334.3 464 42.0
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.0e-89 333.2 368 49.7
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.2e-84 317.0 435 43.0
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 8.5e-84 315.1 459 41.0
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.2e-82 311.2 309 54.0
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.2e-80 304.7 315 52.4
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.0e-77 293.9 309 53.1
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 8.0e-74 282.0 437 39.6
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 6.3e-71 272.3 415 38.6
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 2.4e-70 270.4 439 35.8
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.6e-69 266.2 445 38.4
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.9e-68 263.1 437 37.8
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 5.6e-67 259.2 245 54.3
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 4.4e-64 249.6 432 35.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 8.3e-63 245.4 371 41.0
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 4.3e-59 233.0 231 53.2
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.2e-56 224.9 232 52.6
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.7e-53 213.8 383 38.6
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 7.3e-51 205.7 310 39.4
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.0e-49 199.9 184 54.3
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 3.4e-48 196.8 519 29.9
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.2e-45 188.3 150 58.7
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 8.9e-41 172.2 474 28.3
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 3.5e-29 133.7 143 49.0
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.0e-24 117.9 157 40.8
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 6.4e-23 112.8 470 27.4
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 1.9e-19 101.3 90 57.8
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-17 95.5 86 48.8
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 7.2e-06 56.2 71 40.8
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 7.2e-06 56.2 72 40.3


User provided reference genes

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