Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p04340 Brassica napus HOM05D006583 ORTHO05D008134 1.2e-39 166.0 83 100.0
BolC5t29208H Brassica oleracea HOM05D006583 ORTHO05D008134 8.8e-38 159.8 83 98.8
Aa31LG1G8200 Aethionema arabicum HOM05D006583 ORTHO05D008134 9.4e-16 86.7 74 59.5
Sp1g04870 Schrenkiella parvula HOM05D006583 ORTHO05D008134 9.4e-16 86.7 74 62.2
Thhalv10008762m.g Eutrema salsugineum HOM05D006583 ORTHO05D008134 4.7e-15 84.3 71 60.6
CARHR005580 Cardamine hirsuta HOM05D006583 ORTHO05D008134 8.0e-15 83.6 71 60.6
AL1G16010 Arabidopsis lyrata HOM05D006583 ORTHO05D008134 1.0e-14 83.2 71 59.2
BcaB03g13442 Brassica carinata HOM05D006583 ORTHO05D008134 2.3e-14 82.0 74 58.1
DCAR_009954 Daucus carota HOM05D006583 ORTHO05D008134 5.2e-14 80.9 72 61.1
C08p02370 Brassica napus HOM05D006583 ORTHO05D008134 8.8e-14 80.1 74 59.5
BolC8t47029H Brassica oleracea HOM05D006583 ORTHO05D008134 8.8e-14 80.1 74 59.5
A08p36140 Brassica napus HOM05D006583 ORTHO05D008134 1.2e-13 79.7 74 58.1
BraA08t35521Z Brassica rapa HOM05D006583 ORTHO05D008134 1.2e-13 79.7 74 58.1
TAR376G0698 Trochodendron aralioides HOM05D006583 ORTHO05D008134 1.5e-13 79.3 70 60.0
MBI04_g18961_MAGBIO Magnolia biondii HOM05D006583 ORTHO05D008134 2.0e-13 79.0 70 60.0
PSO541G0494 Papaver somniferum HOM05D006583 ORTHO05D008134 2.6e-13 78.6 70 62.9
Ciclev10002444m.g Citrus clementina HOM05D006583 ORTHO05D008134 3.4e-13 78.2 74 56.8
ClCG05G018650 Citrullus lanatus HOM05D001685 ORTHO05D009095 4.4e-13 77.8 76 53.9
TAR068G0005 Trochodendron aralioides HOM05D000284 ORTHO05D008134 4.4e-13 77.8 70 61.4
Aqoxy5G01518 Aquilegia oxysepala HOM05D006583 ORTHO05D008134 7.5e-13 77.0 70 60.0
AT1G06060 Arabidopsis thaliana HOM05D006583 ORTHO05D008134 1.3e-12 76.3 71 54.9
EL10Ac1g00579 Beta vulgaris HOM05D006583 ORTHO05D008134 1.3e-12 76.3 74 56.8
FAN15G3353 Fragaria x ananassa HOM05D006583 ORTHO05D008134 1.3e-12 76.3 71 59.2
FAN20G0107 Fragaria x ananassa HOM05D006583 ORTHO05D008134 1.3e-12 76.3 71 59.2
FAN27G2561 Fragaria x ananassa HOM05D001685 ORTHO05D009095 1.3e-12 76.3 71 59.2
PSO675G6535 Papaver somniferum HOM05D006583 ORTHO05D008134 1.3e-12 76.3 70 60.0
RcHm_v2.0_Chr6g0301961 Rosa chinensis HOM05D006583 ORTHO05D008134 1.3e-12 76.3 70 58.6
Dinv31797 Davidia involucrata HOM05D006583 ORTHO05D008134 1.7e-12 75.9 70 58.6
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 1.7e-12 75.9 73 54.8
CsaV3_3G045530 Cucumis sativus L. HOM05D006583 ORTHO05D008134 2.2e-12 75.5 73 54.8
CSS0045478 Camellia sinensis var. sinensis HOM05D006583 ORTHO05D008134 3.7e-12 74.7 73 54.8
CDE06G0069 Ceratophyllum demersum HOM05D006583 ORTHO05D008134 3.7e-12 74.7 70 55.7
Dinv39470 Davidia involucrata HOM05D006583 ORTHO05D008134 3.7e-12 74.7 70 58.6
Phvul.009G013100 Phaseolus vulgaris HOM05D006583 ORTHO05D008134 3.7e-12 74.7 70 57.1
VMungo1309G1713 Vigna mungo HOM05D006583 ORTHO05D008134 3.7e-12 74.7 70 57.1
Duzib093G0899 Durio zibethinus HOM05D006583 ORTHO05D008134 4.8e-12 74.3 70 58.6
PGR031G1646 Punica granatum HOM05D006583 ORTHO05D008134 6.3e-12 73.9 70 55.7
TWI36G1724 Tripterygium wilfordii HOM05D006583 ORTHO05D008134 6.3e-12 73.9 69 58.0
vmacro21691 Vaccinium macrocarpon HOM05D006583 ORTHO05D008134 6.3e-12 73.9 70 58.6
Manes.18G019300 Manihot esculenta HOM05D006583 ORTHO05D008134 8.3e-12 73.6 70 57.1
GSVIVG01009797001 Vitis vinifera HOM05D006583 ORTHO05D008134 8.3e-12 73.6 70 57.1
arahy.Tifrunner.gnm1.ann1.F32EHA Arachis hypogaea HOM05D006583 ORTHO05D008134 1.1e-11 73.2 70 54.3
arahy.Tifrunner.gnm1.ann1.IRD816 Arachis hypogaea HOM05D006583 ORTHO05D008134 1.1e-11 73.2 70 54.3
COL.COLO4_26225 Corchorus olitorius HOM05D006583 ORTHO05D008134 1.1e-11 73.2 70 57.1
FvH4_2g38860 Fragaria vesca HOM05D006583 ORTHO05D008134 1.1e-11 73.2 70 57.1
Atru.chr13.382 Acer truncatum HOM05D001685 ORTHO05D009095 1.4e-11 72.8 74 52.7
Glyma.04G028200 Glycine max HOM05D006583 ORTHO05D008134 1.4e-11 72.8 70 55.7
Glyma.06G028400 Glycine max HOM05D006583 ORTHO05D008134 1.4e-11 72.8 70 55.7
THA.LOC104798636 Tarenaya hassleriana HOM05D006583 ORTHO05D008134 1.4e-11 72.8 70 55.7
Gohir.A01G113700 Gossypium hirsutum HOM05D006583 ORTHO05D008134 1.8e-11 72.4 70 57.1
Gohir.D01G101500 Gossypium hirsutum HOM05D006583 ORTHO05D008134 1.8e-11 72.4 70 57.1
Gorai.002G126000 Gossypium raimondii HOM05D006583 ORTHO05D008134 1.8e-11 72.4 70 57.1
MD08G1023000 Malus domestica HOM05D006583 ORTHO05D008134 1.8e-11 72.4 70 57.1
Prupe.1G372300 Prunus persica HOM05D006583 ORTHO05D008134 1.8e-11 72.4 70 57.1
Rhsim06G0027600 Rhododendron simsii HOM05D006583 ORTHO05D008134 1.8e-11 72.4 70 55.7
Thecc.08G035300 Theobroma cacao HOM05D006583 ORTHO05D008134 1.8e-11 72.4 70 58.6
Hma1.2p1_0469F.1_g158810 Hydrangea macrophylla HOM05D006583 ORTHO05D008134 3.1e-11 71.6 70 57.1
Os01g0775600 Oryza sativa ssp. japonica HOM05D006583 ORTHO05D008134 3.1e-11 71.6 71 54.9
Actinidia15372 Actinidia chinensis HOM05D006583 ORTHO05D008134 4.1e-11 71.2 70 55.7
Ah.02g110970 Amaranthus hybridus HOM05D006583 ORTHO05D008134 4.1e-11 71.2 74 52.7
Carub.0001s0539 Capsella rubella HOM05D006583 ORTHO05D008134 4.1e-11 71.2 71 53.5
Duzib041G0648 Durio zibethinus HOM05D006583 ORTHO05D008134 4.1e-11 71.2 70 55.7
Lalb_Chr11g0062151 Lupinus albus HOM05D006583 ORTHO05D008134 5.4e-11 70.9 70 55.7
PGSC0003DMG401003705 Solanum tuberosum HOM05D006583 ORTHO05D008134 7.0e-11 70.5 72 55.6
MELO3C003787.2 Cucumis melo HOM05D006583 ORTHO05D008134 9.1e-11 70.1 73 53.4
ECA246G3248 Erigeron canadensis HOM05D006583 ORTHO05D008134 9.1e-11 70.1 74 54.1
Sc02g0005320 Simmondsia chinensis HOM05D006583 ORTHO05D008134 9.1e-11 70.1 72 51.4
TWI56G0908 Tripterygium wilfordii HOM05D006583 ORTHO05D008134 9.1e-11 70.1 69 56.5
Lj4A32T64 Lonicera japonica HOM05D006583 ORTHO05D008134 1.2e-10 69.7 70 57.1
Potri.002G029700 Populus trichocarpa HOM05D006583 ORTHO05D008134 1.6e-10 69.3 70 54.3
CDE07G0605 Ceratophyllum demersum HOM05D006583 ORTHO05D008134 2.0e-10 68.9 73 47.9
Sabra02G0023600 Salix brachista HOM05D001685 ORTHO05D008134 2.0e-10 68.9 70 54.3
CAN.G851.29 Capsicum annuum HOM05D006583 ORTHO05D008134 2.7e-10 68.6 72 54.2
Potri.005G233000 Populus trichocarpa HOM05D006583 ORTHO05D008134 2.7e-10 68.6 71 54.9
Solyc04g080900.3 Solanum lycopersicum HOM05D001685 ORTHO05D009095 2.7e-10 68.6 72 52.8
Sopen04g034500 Solanum pennellii HOM05D006583 ORTHO05D008134 2.7e-10 68.6 72 52.8
HPP92_015882 Vanilla planifolia HOM05D006583 ORTHO05D008134 7.7e-10 67.0 71 52.1
Cc10_g02290 Coffea canephora HOM05D006583 ORTHO05D008134 1.7e-09 65.9 70 51.4
Hund26881 Selenicereus undatus HOM05D006583 ORTHO05D008134 1.7e-09 65.9 70 51.4
AUR62034544 Chenopodium quinoa HOM05D006583 ORTHO05D008134 2.2e-09 65.5 71 47.9
CANSAT25G2309 Cannabis sativa HOM05D006583 ORTHO05D008134 2.9e-09 65.1 74 48.6
CiPaw.07G155600 Carya illinoinensis HOM05D006583 ORTHO05D008134 2.9e-09 65.1 70 52.9
Ca_13385_v3 Cicer arietinum L. HOM05D006583 ORTHO05D008134 3.8e-09 64.7 70 52.9
Eucgr.F01851 Eucalyptus grandis HOM05D006583 ORTHO05D008134 3.8e-09 64.7 69 52.2
TPR.G13692 Trifolium pratense HOM05D006583 ORTHO05D008134 3.8e-09 64.7 70 54.3
MSTRG.1241 Avicennia marina HOM05D006583 ORTHO05D008134 5.0e-09 64.3 70 51.4
MD15G1020700 Malus domestica HOM05D006583 ORTHO05D008134 5.0e-09 64.3 70 51.4
Peaxi162Scf00189g00133 Petunia axillaris HOM05D001685 ORTHO05D009095 5.0e-09 64.3 73 50.7
Lalb_Chr23g0266401 Lupinus albus HOM05D006583 ORTHO05D008134 6.5e-09 63.9 70 51.4
Sabra05G0179700 Salix brachista HOM05D006583 ORTHO05D008134 6.5e-09 63.9 69 52.2
CAN.G187.2 Capsicum annuum HOM05D006583 ORTHO05D008134 8.5e-09 63.5 82 46.3
Lj5g0011733 Lotus japonicus HOM05D006583 ORTHO05D008134 8.5e-09 63.5 70 50.0
Psat6g006360 Pisum sativum HOM05D006583 ORTHO05D008134 8.5e-09 63.5 70 51.4
AUR62014454 Chenopodium quinoa HOM05D006583 ORTHO05D008134 1.9e-08 62.4 71 46.5
Medtr1g019870 Medicago truncatula HOM05D006583 ORTHO05D008134 1.9e-08 62.4 71 52.1
Haze_22568 Corylus avellana HOM05D006583 ORTHO05D008134 5.5e-08 60.8 70 50.0
Migut.C00777 Erythranthe guttata HOM05D001685 ORTHO05D009095 5.5e-08 60.8 73 47.9
QL02p010374 Quercus lobata HOM05D006583 ORTHO05D008134 5.5e-08 60.8 73 50.7
QL02p010412 Quercus lobata HOM05D006583 ORTHO05D008134 5.5e-08 60.8 73 50.7
ATR0665G303 Amborella trichopoda HOM05D006583 ORTHO05D008134 7.2e-08 60.5 70 48.6
HanXRQChr03g0069701 Helianthus annuus HOM05D006583 ORTHO05D008134 9.4e-08 60.1 70 48.6
HanXRQChr05g0149481 Helianthus annuus HOM05D006583 ORTHO05D008134 1.2e-07 59.7 70 48.6
Nitab4.5_0002156g0120 Nicotiana tabacum HOM05D006583 ORTHO05D008134 1.6e-07 59.3 64 50.0
SEGI_23693 Sequoiadendron giganteum HOM05D006583 ORTHO05D008134 1.6e-07 59.3 70 48.6
SEGI_39793 Sequoiadendron giganteum HOM05D006583 ORTHO05D008134 1.6e-07 59.3 70 48.6
Nitab4.5_0001840g0010 Nicotiana tabacum HOM05D006583 ORTHO05D008134 4.7e-07 57.8 68 51.5
SGA_v2.0_scaffold201G41378 Striga asiatica HOM05D006583 ORTHO05D008134 1.4e-06 56.2 70 44.3
Glyma.17G254300 Glycine max HOM05D006583 ORTHO05D008134 2.3e-06 55.5 71 49.3
Glyma.14G070300 Glycine max HOM05D006583 ORTHO05D008134 4.0e-06 54.7 71 47.9
SalBow7G0241 Salvia bowleyana HOM05D006583 ORTHO05D008134 5.2e-06 54.3 70 45.7


User provided reference genes

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