Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 2.4e-140 502.3 275 100.0
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 2.4e-140 502.3 275 100.0
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 3.8e-138 495.0 275 98.9
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 3.1e-124 448.7 276 91.7
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 3.1e-124 448.7 276 91.7
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 2.1e-120 436.0 275 89.1
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 4.9e-93 345.1 279 67.4
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 1.7e-82 310.1 275 65.1
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 3.4e-78 295.8 279 62.4
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 5.8e-78 295.0 147 98.6
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 7.6e-78 294.7 279 63.4
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 2.4e-76 289.7 279 58.1
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 1.0e-74 284.3 281 59.1
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 1.7e-61 240.4 231 58.9
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 1.9e-49 200.3 251 51.8
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 2.2e-16 90.5 185 33.5
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 1.1e-15 88.2 201 32.8
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 2.4e-15 87.0 139 35.3
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 7.0e-15 85.5 173 31.2
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 7.0e-15 85.5 176 29.0
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 1.2e-14 84.7 224 26.8
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 3.5e-14 83.2 150 32.7
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 5.9e-14 82.4 218 27.1
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 7.7e-14 82.0 226 31.0
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 7.7e-14 82.0 235 30.2
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 1.0e-13 81.6 248 28.2
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 1.3e-13 81.3 237 30.8
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 2.2e-13 80.5 173 30.6
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 2.2e-13 80.5 219 30.1
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 2.9e-13 80.1 229 28.8
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 3.8e-13 79.7 225 29.8
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 6.5e-13 79.0 242 29.8
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.5e-12 77.8 171 29.8
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 1.5e-12 77.8 214 28.5
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 1.9e-12 77.4 216 26.4
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 1.9e-12 77.4 226 28.8
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 1.9e-12 77.4 139 30.9
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 1.9e-12 77.4 210 28.6
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 3.2e-12 76.6 150 32.0
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 4.2e-12 76.3 141 31.2
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 4.2e-12 76.3 250 26.4
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 4.2e-12 76.3 250 26.4
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 4.2e-12 76.3 235 28.9
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 7.2e-12 75.5 180 28.9
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 7.2e-12 75.5 236 29.2
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.2e-11 74.7 249 26.1
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.2e-11 74.7 140 30.7
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 1.6e-11 74.3 161 29.8
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 2.1e-11 73.9 220 31.4
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 2.7e-11 73.6 178 30.3
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 2.7e-11 73.6 234 28.6
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 3.6e-11 73.2 159 31.4
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 1.0e-10 71.6 217 27.6
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 1.4e-10 71.2 235 23.8
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.8e-10 70.9 250 25.6
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 2.3e-10 70.5 181 29.3
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 2.3e-10 70.5 159 31.4
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 2.3e-10 70.5 259 25.1
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 1.5e-09 67.8 224 29.0
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 1.5e-09 67.8 216 25.9
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 3.3e-09 66.6 242 26.0
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 3.3e-09 66.6 262 26.0
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 5.7e-09 65.9 227 30.0
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 1.7e-08 64.3 227 26.0
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 4.8e-08 62.8 230 26.1
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 6.3e-08 62.4 148 31.1
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 8.2e-08 62.0 226 26.5
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 1.4e-07 61.2 230 25.7
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 1.4e-07 61.2 225 24.9
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 1.8e-07 60.8 138 30.4
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 3.1e-07 60.1 242 28.5
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 5.3e-07 59.3 174 28.2
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 7.0e-07 58.9 224 25.0
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 7.0e-07 58.9 173 29.5
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 9.1e-07 58.5 211 27.5
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 1.6e-06 57.8 211 27.5
Cpa.g.sc58.94 Carica papaya HOM05D007633 ORTHO05D008817 2.0e-06 57.4 77 33.8
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 2.0e-06 57.4 140 27.1
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 2.7e-06 57.0 214 26.6
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 3.5e-06 56.6 147 29.3
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 5.9e-06 55.8 211 27.0


User provided reference genes

Program Settings