Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 0.0e+00 1122.5 686 100.0
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 0.0e+00 1097.4 686 98.1
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 0.0e+00 1087.8 686 92.6
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 1.3e-283 979.5 687 90.1
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 8.5e-280 966.8 697 89.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 4.3e-223 778.5 711 77.4
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 5.7e-199 698.4 696 68.2
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 4.8e-198 695.3 696 68.1
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 8.2e-198 694.5 693 68.5
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 1.4e-197 693.7 709 65.2
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.5e-196 690.3 711 69.5
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 8.5e-195 684.5 714 62.6
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 7.9e-185 651.4 732 66.5
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 2.2e-182 643.3 895 56.0
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.2e-169 600.9 967 51.8
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.4e-157 560.8 558 59.1
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.6e-153 547.4 707 61.5
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.1e-149 532.7 644 60.6
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.5e-122 444.5 355 69.3
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.9e-122 444.1 753 48.9
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.0e-79 301.2 236 68.6
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.2e-47 195.7 711 27.8
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 4.5e-47 193.7 703 28.9
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 7.7e-47 193.0 713 27.6
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 7.7e-47 193.0 717 28.7
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.3e-46 192.2 698 29.1
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.0e-43 181.0 752 28.1
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.2e-42 179.1 717 27.1
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.5e-42 178.7 753 28.4
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 2.0e-42 178.3 711 29.4
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 3.4e-42 177.6 702 28.9
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.7e-41 175.3 712 37.8
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.7e-41 175.3 746 27.6
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.2e-41 174.9 696 26.6
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 4.8e-41 173.7 595 28.9
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.4e-40 171.4 699 27.8
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 5.4e-40 170.2 762 27.8
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 1.2e-39 169.1 700 27.4
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 1.6e-39 168.7 720 28.3
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 5.9e-39 166.8 748 27.7
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.3e-38 165.6 518 29.2
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 6.6e-38 163.3 766 27.4
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.1e-37 162.5 708 35.9
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.5e-37 161.4 693 25.7
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.5e-37 161.4 729 27.6
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 3.3e-37 161.0 762 28.7
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 4.2e-37 160.6 553 29.3
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 9.5e-37 159.5 756 25.7
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 8.0e-36 156.4 523 27.7
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.0e-35 156.0 709 36.2
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 5.2e-35 153.7 599 28.5
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.2e-34 152.5 710 34.9
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.5e-34 152.1 711 35.6
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.5e-34 152.1 709 25.7
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.0e-34 151.8 763 25.7
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 2.0e-34 151.8 589 28.0
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 3.4e-34 151.0 746 25.9
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 5.7e-34 150.2 247 38.1
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 5.7e-34 150.2 708 25.6
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 5.7e-34 150.2 218 41.7
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 7.5e-34 149.8 734 27.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.7e-33 148.7 700 25.7
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.7e-33 148.7 704 25.6
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.2e-33 148.3 710 35.1
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 6.3e-33 146.7 826 26.2
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.1e-32 146.0 728 26.5
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 3.1e-32 144.4 244 36.9
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 3.1e-32 144.4 581 29.8
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 4.1e-32 144.1 244 36.9
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 5.4e-32 143.7 517 26.5
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.2e-31 142.5 491 28.1
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.6e-31 142.1 719 25.3
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 5.0e-30 137.1 235 36.2
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.5e-29 135.6 779 25.0
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.9e-29 135.2 688 24.0
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 4.3e-29 134.0 726 24.8
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 5.6e-29 133.7 787 24.9
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.0e-27 129.4 717 25.0
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.3e-27 128.3 702 27.1
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 3.1e-27 127.9 814 29.7
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 4.0e-27 127.5 778 23.9
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.9e-25 121.3 731 25.0
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 3.7e-25 120.9 247 36.0
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.1e-24 119.4 714 23.7
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.4e-24 119.0 710 23.5
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 2.4e-24 118.2 736 26.4
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 4.1e-24 117.5 177 36.7
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 4.1e-24 117.5 712 24.0
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 5.4e-24 117.1 249 38.2
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.4e-24 117.1 515 28.2
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 7.0e-24 116.7 198 35.9
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 3.5e-23 114.4 582 25.6
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 3.5e-23 114.4 706 22.9
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 6.0e-23 113.6 179 37.4
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.7e-22 112.1 231 35.5
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.3e-22 111.7 776 23.6
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 7.3e-21 106.7 723 24.3
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 7.3e-21 106.7 752 23.5
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 7.3e-21 106.7 110 50.9
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.2e-20 105.9 681 24.8
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 4.7e-20 104.0 184 37.0
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.1e-19 102.8 185 36.8
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 1.8e-19 102.1 255 31.4
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.3e-19 101.7 150 40.0
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 8.9e-19 99.8 248 33.1
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 8.9e-19 99.8 222 34.7
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 3.4e-18 97.8 341 29.9
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 3.4e-18 97.8 521 38.2
BcaC07g36863 Brassica carinata HOM05D005385 ORTHO05D006768 4.4e-18 97.4 75 70.7
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 7.5e-18 96.7 245 31.4
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.7e-17 95.5 710 24.1
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.7e-17 94.4 145 45.5
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 4.1e-16 90.9 223 33.6
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 5.4e-16 90.5 243 30.0
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 6.6e-14 83.6 236 28.8
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.1e-13 82.8 242 28.5
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 7.3e-13 80.1 251 27.1
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 5.2e-11 73.9 205 33.2
BcaB04g19303 Brassica carinata HOM05D005385 ORTHO05D006768 1.2e-10 72.8 52 69.2
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 7.5e-10 70.1 206 35.0
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 7.5e-10 70.1 206 35.0
BcaB04g17601 Brassica carinata HOM05D005385 ORTHO05D039913 1.3e-09 69.3 45 73.3
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 1.7e-09 68.9 104 39.4
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.7e-09 68.9 303 28.7
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 2.9e-09 68.2 170 34.7
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.0e-06 59.7 96 37.5
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.3e-06 59.3 71 50.7
BcaB05g22977 Brassica carinata HOM05D005385 ORTHO05D006768 3.0e-06 58.2 105 40.0
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 3.0e-06 58.2 108 41.7
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 3.9e-06 57.8 234 27.4
C02p46800 Brassica napus HOM05D005385 ORTHO05D039913 6.6e-06 57.0 40 70.0


User provided reference genes

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