Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 0.0e+00 1970.7 984 100.0
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 0.0e+00 1957.6 984 99.4
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 0.0e+00 1890.9 991 95.7
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 0.0e+00 1669.1 1004 84.4
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 0.0e+00 1656.7 1005 84.0
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 0.0e+00 1611.7 988 83.7
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 0.0e+00 1610.1 1005 81.1
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 0.0e+00 1547.3 1005 77.8
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 0.0e+00 1359.4 1005 70.9
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 0.0e+00 1331.6 1003 66.7
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 0.0e+00 1229.2 711 85.8
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 0.0e+00 1223.0 719 84.3
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 1.9e-280 969.5 1015 48.7
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 3.6e-279 965.3 995 49.2
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 1.0e-273 947.2 1017 47.9
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 1.9e-272 943.0 1003 49.0
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 1.6e-266 923.3 1004 48.5
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 8.5e-265 917.5 1040 46.6
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 4.0e-262 908.7 980 47.8
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 5.9e-258 894.8 987 46.1
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 2.9e-257 892.5 1020 46.0
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 6.1e-255 884.8 1019 45.8
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 8.0e-255 884.4 1003 46.1
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.2e-253 880.6 1018 46.1
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.4e-253 879.0 1015 46.1
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 1.7e-252 876.7 1010 46.8
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 2.8e-252 875.9 999 46.0
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 3.7e-252 875.5 1011 45.8
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.4e-251 872.8 1011 46.1
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 3.2e-248 862.4 1011 45.5
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.3e-246 856.3 981 45.6
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 6.6e-241 838.2 1009 43.1
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 7.3e-240 834.7 981 44.9
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 1.5e-237 827.0 1008 42.9
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 4.1e-235 818.9 1003 43.7
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 1.7e-233 813.5 1011 43.6
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 2.3e-233 813.1 1012 42.6
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 3.3e-232 809.3 1004 44.1
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 3.1e-230 802.7 994 43.6
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 5.2e-230 802.0 1004 43.8
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 2.9e-228 796.2 1001 42.7
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 9.2e-227 791.2 1011 42.7
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 2.0e-226 790.0 998 42.6
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 3.9e-225 785.8 998 42.3
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 6.6e-225 785.0 977 42.9
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 6.6e-225 785.0 1002 42.8
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 3.6e-223 779.2 1011 41.0
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 2.3e-222 776.5 1006 41.9
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.1e-222 776.2 1002 42.9
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 8.9e-222 774.6 1003 42.0
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 3.4e-221 772.7 1018 41.0
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 2.9e-220 769.6 1014 40.0
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 6.4e-220 768.5 839 46.0
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 9.2e-219 764.6 997 40.8
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 1.2e-218 764.2 1006 41.4
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 7.8e-218 761.5 1000 41.4
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 3.3e-216 756.1 1015 40.3
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 6.8e-214 748.4 980 41.0
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 5.8e-213 745.3 991 41.2
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 3.8e-212 742.7 1008 39.9
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 8.4e-212 741.5 1005 40.1
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 2.7e-210 736.5 976 40.7
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.3e-209 734.2 883 45.4
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 1.5e-208 730.7 1024 40.5
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 8.4e-204 714.9 1000 39.0
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 1.1e-200 704.5 938 39.7
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 1.1e-198 698.0 1120 37.3
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 3.1e-198 696.4 1003 38.5
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 1.2e-197 694.5 751 48.2
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.5e-197 692.6 912 40.8
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 2.2e-196 690.3 815 45.2
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 8.4e-196 688.3 995 38.4
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.1e-191 673.7 996 39.4
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 2.8e-183 646.7 923 37.9
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 3.8e-180 636.3 873 40.8
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 8.2e-175 618.6 1020 36.9
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.7e-172 610.9 916 38.2
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 7.9e-162 575.5 744 40.6
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 1.4e-161 574.7 838 38.9
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.8e-161 574.3 826 39.7
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 2.3e-161 573.9 851 37.6
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 4.5e-157 559.7 780 41.0
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 8.5e-156 555.4 751 40.2
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 7.0e-150 535.8 1012 33.2
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 9.7e-144 515.4 1067 33.0
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.2e-133 481.9 574 44.3
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 1.6e-133 481.5 1009 33.0
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.2e-131 473.4 573 45.0
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 7.8e-109 399.4 425 48.2
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 2.5e-107 394.4 862 32.6
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 8.3e-103 379.4 241 81.7
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.6e-99 366.7 491 43.2
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 2.1e-98 364.8 744 31.6
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.1e-97 362.5 433 42.3
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 5.1e-76 290.4 1045 25.6
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.1e-75 289.3 372 43.5
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 4.3e-75 287.3 980 25.1
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 1.2e-72 279.3 997 27.0
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 1.0e-63 249.6 194 54.1
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.9e-63 247.3 310 39.7
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 9.0e-57 226.5 156 78.2
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 2.6e-56 224.9 193 52.3
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 6.1e-53 213.8 253 42.7
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.0e-52 213.0 217 51.6
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 8.8e-52 209.9 497 31.0
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 2.0e-51 208.8 422 34.1
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 1.1e-43 183.0 156 67.3
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 2.6e-43 181.8 139 59.0
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 2.2e-42 178.7 231 39.4
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 8.2e-42 176.8 444 30.6
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 1.7e-39 169.1 140 55.7
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.2e-38 164.9 169 47.9
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.5e-38 164.1 185 43.8
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.7e-37 161.8 194 43.8
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 2.2e-23 115.5 148 41.2
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 8.5e-23 113.6 134 42.5
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 3.2e-22 111.7 148 41.2
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 6.1e-21 107.5 92 52.2
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 4.8e-18 97.8 113 46.0
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 2.0e-16 92.4 86 52.3
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 8.0e-13 80.5 96 39.6
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.8e-12 79.3 165 29.7
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.6e-08 66.2 67 49.3
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 6.6e-07 60.8 52 59.6
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 6.6e-07 60.8 126 30.2


User provided reference genes

Program Settings